Conserved Protein Domain Family
Peptidase_C6

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pfam00851: Peptidase_C6 
Helper component proteinase
This protein is found in genome polyproteins of potyviruses.
Statistics
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PSSM-Id: 279223
Aligned: 3 rows
Threshold Bit Score: 614.31
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P0CJ93  299 ARMRYPSDHTCVAGLPVEDCGRVAAl-------------MAHSILPCYKITCPTCAQQYASLPVSDLFKLLHKHARDGln 365  Potato virus Y stra...
P89201  757 RASRLKADHEPYESSNNELIGRLAR--------------LVAAVIPKGHLYCKTCCLRVIKSKRADIVNALSKAKQRG-- 820  Sweet potato mild m...
O11436  267 APYCQPSHHT---------FGHMCRvtwsdteilqfremLSQAIMPQRDPRCDICAEVAGQRTKDEILQHARTSQMMQml 337  Ryegrass mosaic vir...
P0CJ93  366 rlgaDKDRFIHVNkfLIALEHLTEPVDLNLELFNeifksigeKQQAPFKNLNVlnnfflkgkentahEWQVAQLSLLELA 445  Potato virus Y stra...
P89201  821 ----ERDEFIYDE--LIKLFELQAPPPYKIATIT--------SDDDMFAHIRI--------------GWKPYSGRLSLIM 872  Sweet potato mild m...
O11436  338 efgkEDERWKAPRrvMETLLEESNWPSMDYSTSSeitticcgNNDEPFRRIYSimkvlaepnladvsAWQEANSSLLQLA 417  Ryegrass mosaic vir...
P0CJ93  446 RFQKNRTDNIkkgdiSFFRNKLSAKANwnly---------lscDNQLDK----NANFLWGQREYHAKRFFSNFFEEIDPA 512  Potato virus Y stra...
P89201  873 QHLQGLHTSI-----SMLHQSLAGAQN----------------DQQIDRqalhNQVRILHQRNEEHMPFLKKAVDEIQLL 931  Sweet potato mild m...
O11436  418 RYMKNREMSVqagnsATFTNPFPPTVHtfgptnngadilqgpwDN-------------WGDKQPIALAFFEKHFNKWQ-I 483  Ryegrass mosaic vir...
P0CJ93  513 KGYSA-YEIRKHPSGTRKLSIGNLVVPL---DLAEF--------------RQKMKGDYRKQ------------------- 555  Potato virus Y stra...
P89201  932 NATDQvANARELYLDTRATSTGDFDILRkyqSIYEFfpnimsrankvgmaVIKSETSLSKAfalmdnaksmnaihtlige 1011 Sweet potato mild m...
O11436  484 NEFSIdRRVRKHIRGTRKLALMDLNQSRsikDLEDH--------------VQEEEIPYERK------------------- 530  Ryegrass mosaic vir...
P0CJ93  556 ---PGVSKKCTsSKDGNYVYPCCCTTLDDGSAIESTFyPPTKKHLVIGNSGDQKFVDLPKGDSEMLYIAKQGYCYINVfL 632  Potato virus Y stra...
P89201 1012 dviDNTSGACL-MKNDKTFFSIGCKQGVDGSKMYGPL-CPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQ-L 1088 Sweet potato mild m...
O11436  531 ------TESCItMYKDQYLYSCSCVTARDGKPYLSMRyLQATGLIPIARGADVQHMPNSDSWQGFYYVAPEGYCYINIfL 604  Ryegrass mosaic vir...
P0CJ93  633 AMLINISEEDAKDFTK-----KVRDMCVPKLGTWPTMMDLATTCAQMRIFYPDVHDAELPRILVDHDTQTCHVVDSFGSQ 707  Potato virus Y stra...
P89201 1089 AIMVGFINEDEMEFYK-----NQMNQIVLNLGAWPTFEQYLVELRAISLDYPKVRGCPAAIHLVSHANKLIHVLGQFGTI 1163 Sweet potato mild m...
O11436  605 PMLA------LAPYYKvgklsELIGKLIKVLGKWPKLKDVALACLYITEYHTYAQNALLPPILVHHSTRTMHVVDTLGSL 678  Ryegrass mosaic vir...
P0CJ93  708 TTGYHILKASSVSQLILFANDELESDIKHYRVG 740  Potato virus Y strain N
P89201 1164 NQGWHALEVATVGELVDLCHKKVEGEMLTYKVG 1196 Sweet potato mild mottle virus isolate Salazar
O11436  679 SVGYHVLKAGTVKHLVNLASRLATGEMLDYNVG 711  Ryegrass mosaic virus isolate Danish
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