6MRM


Conserved Protein Domain Family
Viral_coat

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pfam00729: Viral_coat 
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Viral coat protein (S domain)
Statistics
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PSSM-Id: 395591
Aligned: 10 rows
Threshold Bit Score: 195.77
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6MRM_B  24 VKTVAIPFAKTQII-KTVNP--------PPKPARGILHTQLVMSvvg------svqMRTNNGKSNQRFRLNPsnPALFPT 88  Red clover necrotic m...
Q5NDM8  47 GRVVTAPVSSAALI-RYKAPsl----ngNSMDSVRLASKSLVIEa-----------VKVGIEYQVSVVPLVP--CIQHTW 108 Poinsettia latent vir...
Q83928 110 gGTTAAPVSISRNInRRSKPsi-----kMMGDAVVISHSEMLGAinsgtpssnvtaFRCTG------YRANPgmSTIFPW 178 Oat chlorotic stunt v...
P11689  76 GGAIMAPVAVTRQL-VGSKPkf----tgRTSGSVTVTHREYLSQvnn------stgFQVNGGIVGNLLQLNPlnGTLFSW 144 Tomato bushy stunt vi...
Q9QBU3  65 pGAIAAPVANTRII-RASKPkf-----tRSKGSVTIAHRELLGQfnn------ssgLVVNGGVSGNLYRINPsnPVVFPW 132 Pothos latent virus i...
Q9Q6X7  51 TPAILAFTPRRPRM-TNSPPrtsrnspgQAGKSMTMSKTELLCTvkgtt----------gvipSFEDWVVSPrnVAVFPQ 119 Carnation mottle viru...
P11642  23 RAIRANPPVPRPNPqRNRPPpa----------gTTCSMSEILLAvsatta-dqileIPVCAGIDFPA-GTSPryIGAAKW 90  Maize chlorotic mottl...
P89036  39 YVTTLGP----------SRPrm-----gQGQGWQKLSHEEIILQvnsstaadtiqtIPIIPRLSVPA-GDKPiySGSAPH 102 Panicum mosaic virus ...
P22959  61 GGYIVAPTSGGVVT-RPIVPkf-----sNRGDSTIVRNTEILNNqil-------aaLGAFNTTNSALIAAAP------SW 121 Tobacco necrosis virus A
O72158  46 AGVSMAPIAQGTMV-RLREPsl-----rTAGGVTVLTHSELSTE------------LSVTNAIVITSELVMP--YTMGTW 105 Southern bean mosaic ...
6MRM_B  89 LAYEAANYDMYRLKKLTLRYVPLVTVQNSGRVAMIWDPDSQDSAPQSRQEISAYSRSVSTAVYEKC-------------- 154 Red clover necrotic m...
Q5NDM8 109 LSGVACYWSKYRWRSCRLVYIPYCSSSFTGYVSMGLSYDYADAIPSDETEMSALKGYTTTSAWAGSegikmlsyptgavp 188 Poinsettia latent vir...
Q83928 179 LSATAVNYEKYKFRRLSFTLVPLVSTNYSGRIGVGFDYDSSDLVPGNRQEFYALSNHCENMPWQES-------------- 244 Oat chlorotic stunt v...
P11689 145 LPAIASNFDQYTFNSVVLHYVPLCSTTEVGRVAIYFDKDSEDPEPADRVELANYSVLKETAPWAEA-------------- 210 Tomato bushy stunt vi...
Q9QBU3 133 LQGIAASFDQYKFDRVQLQYVPMCATTETGRVAIYFDKDQQDVEPADRVELANMGHWTESAPWCES-------------- 198 Pothos latent virus i...
Q9Q6X7 120 LSLLATNFNKYRITALTVKYSPACSFETNGRVALGFNDDASDTPPTTKVGFYDLGKHVETAAQTAK-------------- 185 Carnation mottle viru...
P11642  91 LAAQSQMWNTIVFNSVRITWETFTADTTSGYISMAFLSDYMLSIP---TGVEDVARIVPSATIALKnrgpsi-------- 159 Maize chlorotic mottl...
P89036 103 LRTIGSAFAIHRWRALSFEWIPSCPTTTPGNLVLRFYPNYSTETPKTLTDLMDSESLVLVPSLSGKtyrpki-------- 174 Panicum mosaic virus ...
P22959 122 LASIADLYSKYRWLSCEIIYIPKCPTTTSGSIAMAFTYDRNDAAPTARAQLSQSYKAINFPPYAGYdgaaylnsn--qga 199 Tobacco necrosis virus A
O72158 106 LRGVAANWSKYSLLSVRYTYLPSCPSTTSGSIHMGFQYDMADTLPVSVNQLSNLRGYVSGQVWSGSsglcyingtrcldt 185 Southern bean mosaic ...
6MRM_B 155 ------SLTIPADNQWRFVADNTTVDRKLVDF----------GQLLFVT---HSGSDGIETG------DIFLDCEVEFKG 209 Red clover necrotic m...
Q5NDM8 189 sgavvlSLDCASMSKPWYPYISAVAATNLGEKqpellnqytpARAFIGTgggMQGVNGLTAG------RVFMVYDIELIE 262 Poinsettia latent vir...
Q83928 245 ------TVEIKCDNAYRFTGTHVAADNKLIDL----------GQVVVMS---DSVSNGGTISaalplfDLIVNYTVELIE 305 Oat chlorotic stunt v...
P11689 211 ------MLRVPTDKIKRFCDDSSTSDHKLIDL----------GQLGIAT---YGGAGTNAVG------DIFISYSVTLYF 265 Tomato bushy stunt vi...
Q9QBU3 199 ------TLNVPVDNVKRFMNDNTTTDRKLVDL----------GQIGLAT---YGGGSTNPVG------DLFIHYTITLFE 253 Pothos latent virus i...
Q9Q6X7 186 ------DLVIPVDGKTRFIRDSASDDAKLVDF----------GRLVLSTy-gFDKADTV-VG------ELFIQYTIVLSD 241 Carnation mottle viru...
P11642 160 -vmpqnRTVFRCIQAGQFAALGSAADKQMYSP----------GRFIVAI---PKASATQAVG------QIKISYSVSYRG 219 Maize chlorotic mottl...
P89036 175 -etrgnPPELRNIDATAFSAL-SDEDKGDYSV----------GRLVVGS---SKQAVVIQLG------LLRMRYSAEMRG 233 Panicum mosaic virus ...
P22959 200 gsaiavQLDVTKLDKPWYPTISSAGFGALSVLdqnq---fcpASLVVASd--GGPATATPAG------DLFIKYVIEFIE 268 Tobacco necrosis virus A
O72158 186 anaittTLDVGQLGKKWYPFKTSTDFTTAVGVnvniatplvpARLIIAMl-dGSSSTAVSTG------RLYVSYTIQLIE 258 Southern bean mosaic ...
6MRM_B 210 PQPT 213 Red clover necrotic mosaic virus
Q5NDM8 263 PVSP 266 Poinsettia latent virus isolate Germany/Siepen
Q83928 306 PQQa 309 Oat chlorotic stunt virus isolate United Kingdom
P11689 266 PQPT 269 Tomato bushy stunt virus (STRAIN CHERRY)
Q9QBU3 254 PQPL 257 Pothos latent virus isolate pigeonpea
Q9Q6X7 242 PTKT 245 Carnation mottle virus isolate Shanghai
P11642 220 AAIl 223 Maize chlorotic mottle virus Kansas/1987
P89036 234 ATSi 237 Panicum mosaic virus strain Kansas 109S
P22959 269 PINP 272 Tobacco necrosis virus A
O72158 259 PTAL 262 Southern bean mosaic virus isolate Arkansas
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