3TPZ,3GRR,3FTC


Conserved Protein Domain Family
ksgA

?
TIGR00755: ksgA 
Click on image for an interactive view with Cn3D
ribosomal RNA small subunit methyltransferase A
In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification]
Statistics
?
PSSM-Id: 273252
Aligned: 29 rows
Threshold Bit Score: 237.514
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
3TPZ_A         9 HLARKRFGQNFLNDQFVIDSIVSAINPQKG---QAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFL--- 81  Escherichia col...
O27381        17 VRLRRSLGQNYLIDEVKRQRILEYADLRED---DRVLEIGPGIGTLTLPMAEL-AGHVTAIESDPLIAAILMDRLQV--- 89  Methanothermoba...
O28491         1 MKLRKSLGQHMLVDRRVISRIVGYAELSED---DVVLEVGCGTGNLTSALLRK-CS-VVGIEKDPLMVKRLRERFSDfig 75  Archaeoglobus f...
Q58435         2 FKPKKKLGQCFLIDKNFVNKAVESANLTKD---DVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKEL--- 74  Methanocaldococ...
Q9YEM5        26 LRPSDRLGQHFLIDDRAVGEFLKPLEKAAAegiREALEIGPGAGSITLPAAEV-LDRIVAVELDNRLASALSRLAPA--- 101 Aeropyrum perni...
3GRR_A        22 FKPKKKLGQCFLIDKNFVNKAVESANLTKD---DVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKEL--- 94  Methanocaldococ...
WP_004583779   4 VKAKKALGQHFLRDLSIAERIADTLSEHKA---LPVLEIGPGMGVLTQFLLRK-GHDVRVIEIDGESVSYLREEFPE--- 76  Porphyromonas g...
WP_010885882  36 IRPRDSIGQHFLIIEDVIEKAIETANVNEN---DVILEVGPGLGFLTDELAKR-AKKVYTIEIDQKIIEILKKEYSW--- 108 Pyrococcus hori...
WP_011752164  13 IRYKRRLGQHFLVDDTVASRIASFVN---G---EDVYEVGCGLGSLTLPLSER-SAYVFCCEKDEALALFLSRELYRr-g 84  Thermofilum pen...
3FTC_A         3 VRLKKSFGQHLLVSEGVLKKIAEELNIEEG---NTVVEVGGGTGNLTKVLLQHpLKKLYVIELDREMVENLKSIGDE--- 76  Aquifex aeolicu...
3TPZ_A        82 GPKLTIYQQDAMTFNFGELAEkmgqplrVFGNPPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLS 161 Escherichia col...
O27381        90 -DNVDVIVGDALRVDFPEFNK-------VVSNLPYQISSPITFRLLEHD--FELAVLMYQKEFARRMVAEPGTREYSRLS 159 Methanothermoba...
O28491        76 KGRFRLIQGDALKVDFPYFTK-------FVANIPYKISSPLTFKLLKTD--FRLAVVMYQREFAERLCGEDN-----RLG 141 Archaeoglobus f...
Q58435        75 YNNIEIIWGDALKVDLNKLDFn-----kVVANLPYQISSPITFKLIKRG--FDLAVLMYQYEFAKRMVAKEGTKDYGRLS 147 Methanocaldococ...
Q9YEM5       102 --RVAVITGDGVSHAAASQAPl------VFSNTPFNLSPAIVEALAVNNR-VAAAVLGVQYEVARRMTARPGSRDYSRLS 172 Aeropyrum perni...
3GRR_A        95 YNNIEIIWGDALKVDLNKLdf-----nkVVANLPYQISSPITFKLIK--RGFDLAVLMYQYEFAKRMVAAAGTKDYGRLS 167 Methanocaldococ...
WP_004583779  77 LSD-RIIEGDFLHYPLSELFPggr-qycLIGNYPYNISSQIFFRLLDVREQIPCCSGMLQREVAMRLASPPGKKDYGILS 154 Porphyromonas g...
WP_010885882 109 -NNVKIIQGDAVRVEWPKFNk-------VVSNIPYKISSPFTFKLLKTD--FERAVVMYQLEFALRMVAKPGSRNYSRLS 178 Pyrococcus hori...
WP_011752164  85 IGNVDIMVGDALRIDLSRSSHl------VVSNTPFNISSQLVVKLCYDEGLLK-AYLGLQREVAERLYAKPGTREYGRLS 157 Thermofilum pen...
3FTC_A        77 --RLEVINEDASKFPFCSLGKel----kVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQKEVAEKL---QGKKDTGWLS 147 Aquifex aeolicu...
3TPZ_A       162 VMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHpvKDVRVLSRITTEAFNQRRKTIRNSLGNLFs------- 234 Escherichia col...
O27381       160 VMVHFLAEVEIVDYLKPGCFFPRPRVESAVVTLKPTGF-----RAPAFLEDVCRALFQHRKKKTSKSLRESFheirtdls 234 Methanothermoba...
O28491       142 VISKTYCKAEILEIVKPSSFNPPPKVESAIVRIVPEPEVFV--ENRELFEKFVTFAFSMRRKRMGKIVQEFRkry----- 214 Archaeoglobus f...
Q58435       148 VAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPNKGKYHi-ENENFFDDFLRAIFQHRNKSVRKALIDSSkelnyn-- 224 Methanocaldococ...
Q9YEM5       173 VLVSLVFHAELAGVVRPQAYYPRPQVLTAVVTLRRRRRWRS---LYARALELAGCAFTQRNKKASKVLRRCLeaag---- 245 Aeropyrum perni...
3GRR_A       168 VAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPNKGKYHi-ENENFFDDFLRAIFQHRNKSVRKALIDSSkelnyn-- 244 Methanocaldococ...
WP_004583779 155 VLLQLWYNIEYLFTVDASVFDPPPKVQSGVIRLTRNDRKELp-CSEKALKTVVKTAFGQRRKTLRNSLRGILpa------ 227 Porphyromonas g...
WP_010885882 179 LMAQALGNVEIVMKIGKGAFYPRPKVDSALVLIEPRKDKIV------LNENLVKALFQHRRKTVPRALKDSIhmlgvs-- 250 Pyrococcus hori...
WP_011752164 158 VISQLCFSIERLFDVPPNAFLPPPKVFTSFVRLVPLRRLGa--EDVRLVEEFSRRIFPYINRVVTTALRIGLgvnr---- 231 Thermofilum pen...
3FTC_A       148 VFVRTFYDVNYVMTVPPRFFVPPPKVQSAVIKLVKNEKFPV--KDLKNYKKFLTKIFQNRRKVLRKKIPE---------- 215 Aquifex aeolicu...
3TPZ_A       235 -----vEVLTGMGIDp-------AMRAENISVAQYCQMANYL 264 Escherichia coli K-12
O27381       235 fnevlrGLPPEIL----------EKRVFQLRPEDILEIAEHI 266 Methanothermobacter thermautotrophicus str. Delta H
O28491       215 ----gvELAVNKNLA--------EKRPEELGARKFAEIVVGE 244 Archaeoglobus fulgidus DSM 4304
Q58435       225 -kdemkKILEDFLNTnseiknliNEKVFKLSVKDIVNLSNEF 265 Methanocaldococcus jannaschii DSM 2661
Q9YEM5       246 --cappPWLDSLG----------DARVWMLRPEDFVGLAEAC 275 Aeropyrum pernix K1
3GRR_A       245 -kdemkKILEDFLNTnseiknliNEKVFKLSVKDIVNLSNEF 285 Methanocaldococcus jannaschii
WP_004583779 228 ----gfDRFDEPVF---------SKRPEQLSPDDFIALTLLL 256 Porphyromonas gingivalis
WP_010885882 251 -kdeirGIINNVPHS--------NKRVFQLYPEEVKDIEEYL 283 Pyrococcus horikoshii
WP_011752164 232 --evaeDLVRESNVLg-------SRRVREINPEEVLALARQa 264 Thermofilum pendens
3FTC_A       216 ------ELLKEAGINp-------DARVEQLSLEDFFKLYRLI 244 Aquifex aeolicus VF5
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap