Conserved Protein Domain Family
RNA_capsid

?
pfam03035: RNA_capsid 
Calicivirus putative RNA polymerase/capsid protein
Statistics
?
PSSM-Id: 367308
Aligned: 34 rows
Threshold Bit Score: 204.52
Created: 21-Mar-2022
Updated: 13-Oct-2022
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q2VTJ9     1 MAGQIIAGIAADLFSSGLGSLINAGTNALNQKVEYDFNKKLQSASFAHDREMLQAQVAATRQLQQDMIKIKEDTLMLAGF 80  Norovirus swine/GII...
Q918C7     1 MAQAILGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQKNSFIHDKEMMGLQVGASTALLQNSLGTRYNMLTKAGM 80  Norwalk-like virus ...
Q402G1     1 MAQAIIGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSNTFKHDKEMLGLQVGASTALLQNSLSTRYNMLTNAGL 80  Norovirus Hu/GI/Oto...
Q8BCA2     1 MAQAVLGAIAATAAGSAVGAGIEAGTQAALQHQRYQQDLNMQFLSFQHDKEMLGLQVDASNALLQRNLATRYNLLSAAGL 80  Human calicivirus N...
AFJ38517   1 MAQAIIGAIAASTAGSALGAGIQVGGEAALQSQRYQQNLQLQENSFKHDREMIGYQVEASNQLLAKNLATRYSLLRAGGL 80 
Q9YZD9     1 MAQAIIGAIAASAAGSALGAGIQAGAEAALQAQRYQQDLTLQQNSFNHDKEMLGYQVEMSNKLLAKNLNTRYSLLQAGGL 80  Norovirus isolates
Q8JXI9     1 MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRYQQDLTLQQNSFKHDKEMIAYQMEMSNNLLAKNLNTRYSLLQAGGL 80  Norwalk-like virus
Q9YS13     1 MAQAIIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQNTFQHDREMIGYQVQASNALLAKNLNTRYTLLQAGGL 80  Norwalk virus
Q8VA26     1 MARAIIGAIAASAAGSALGAGIQAGAEAALQSQRYQQDLALQRNTFEHDKDMLSYQVQASNALLAKNLNTRYSMLIAGGL 80  Human calicivirus N...
Q3V575     1 MAQAIFGAIAATAACSAVGAGIQAGTEAALQYQRYQQDLTLQQNSFKHDERMLGLQIEGSNALLQKNLLTRYNLLLNSGM 80  Norwalk virus Hu/NV...
Q2VTJ9    81 SPSDAARGSVNAPMTKVLDWNGTRYWAPGAMRTSSYSGRFSSQVPQttfykeppkipssqakpnprpdpkppatqqpQSA 160 Norovirus swine/GII...
Q918C7    81 TSTDAARMVVGAPTTRVIDWNGTRIAAPMSTATTLRSGGFVTVPT--------------------------------VYR 128 Norwalk-like virus ...
Q402G1    81 SSSDAARLVVGAPATRVVDWNGTRVSAPRSSATTLKSGGFMTIPT--------------------------------LYK 128 Norovirus Hu/GI/Oto...
Q8BCA2    81 SSADAARLIAGAPPTKVVDRNGVRISAPTSSAITLKSGNFMSVPVM-------------------------------NYK 129 Human calicivirus N...
AFJ38517  81 TSADAARSVAGAPVTRIVDWNGVRVSAPESSATTLRSGGFMSVPIP-------------------------------FAS 129
Q9YZD9    81 SPSDAARAVAGAPVTRLVDWGGVRVAAPQSSATTLRSGNFMAVPLP-------------------------------AQP 129 Norovirus isolates
Q8JXI9    81 SSADAARAVAGAPVTRIVDWNGTRIAAPNSSATTLRSGGFMTVPMP-------------------------------FSS 129 Norwalk-like virus
Q9YS13    81 SSADAARAVAGAPVTRIVDWNGTRVAAPTSSATTLKSGGFMPVPIP-------------------------------LTQ 129 Norwalk virus
Q8VA26    81 SSADASRAVAGAPVTQLIDWNGTRVAAPRSSSTTLRSGGFMAVPMP-------------------------------VQP 129 Human calicivirus N...
Q3V575    81 SSADAARTIVGAPASKVVDWNGVRIAAPTSTATTLRSGNFMNIPV--------------------------------FQK 128 Norwalk virus Hu/NV...
Q2VTJ9   161 PAPSGSSSGSGSVSSHSTQStslstvrspSSTLSRTASWVlSQN------LEPFMPGSLNISGVTPPSDTfSSRSsvsfr 234 Norovirus swine/GII...
Q918C7   129 GGKNKQSI-GGGFSNVNYDP---------SVSSSRTSQWVsSQNsmr-stLEPFHPGALRTTWVTPPGSTsTSTIs---- 193 Norwalk-like virus ...
Q402G1   129 GKQQQKAPTQAGFSNPNYG----------SVASSRTADWVsSQNstr-ssLGPYHPSALQMTWVTPPGSSsTSTVs---- 193 Norovirus Hu/GI/Oto...
Q8BCA2   130 SNKN-----SAGIDNPNYAPs-------gSSMVSRPSQWVeSQNsl--psLDPFHRSALQTTWVSPPGSTsVSTVs---- 191 Human calicivirus N...
AFJ38517 130 KQKQVQSS---GISNPNYSP---------S-SISRTTSWVeSQNssrfgnLSPYHAEALNTVWLTPPGSTaSST------ 190
Q9YZD9   130 KQKPLASE---GYSNPAYDP------------MQRTASWVqSQNss--rtWSPYHRQALQTVWVTPPGSTsSSS------ 186 Norovirus isolates
Q8JXI9   130 KARAPSTSGSVGMTNPNYGD-----------TMSRVSSWVqSQNssv-rsVSPFHRDALQTVWVTPPGSTsSSS------ 191 Norwalk-like virus
Q9YS13   130 KSKQPLMT---GQDNPNYAA---------S-SISRTASWVqSQNsl--rsMPPFHNDALRTVWVTPPGSSsTSS------ 188 Norwalk virus
Q8VA26   130 KSKAPQSS---GFPNPAYDM---------STVSSRTSSWVqSQNsl--rsVSPFHRQALQTVWVTPPGSTsSSS------ 189 Human calicivirus N...
Q3V575   129 NKQQSSSMLSSGYSNPNYDS---------STLVSRTTQWVeSQNss--rgLSPFHPSALRTTWVTPPGSTsTSTYs---- 193 Norwalk virus Hu/NV...
Q2VTJ9   235 sslpgtVSTVPKEIldswtpaFNTRRQPLFAHLR 268 Norovirus swine/GII/OH-QW101/03/US
Q918C7   194 -----tVSTVPK-F-------FNTERLPLFANRG 214 Norwalk-like virus NLV/Honolulu/219/1992/US
Q402G1   194 -----sVSTAPR-Y-------FNTDRLPLFANMR 214 Norovirus Hu/GI/Otofuke/1979/JP
Q8BCA2   192 -----sTSTIPR-Y-------FNTERLPLFANLR 212 Human calicivirus NLV/Boxer/2001/US
AFJ38517 191 ------LSSVPRGY-------FNTDRLPLFANNR 211
Q9YZD9   187 ------VSTAPRGY-------FNTDRLPLFANLR 207 Norovirus isolates
Q8JXI9   192 ------VSSVPR-F-------FNTDRLPLFANRG 211 Norwalk-like virus
Q9YS13   189 ------MQSSFYGV-------FNTDRLPLFANRR 209 Norwalk virus
Q8VA26   190 ------VSSTPYGV-------FNTDRMPLFANLR 210 Human calicivirus NLV/C59/99
Q3V575   194 -----sVSSVPR-F-------FNTERLPLFANNG 214 Norwalk virus Hu/NV/Chiba/030100/2003/JP
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap