6HXY,6HXT,6HXV


Conserved Protein Domain Family
HD_CCDC61_N

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cd22284: HD_CCDC61_N 
N-terminal head domain found in coiled-coil domain-containing protein 61 and similar proteins
Coiled-coil domain-containing protein 61 (CCDC61), also known as variable flagellar number 3 (VFL3), is a centrosomal protein required for spindle assembly and precise chromosome alignments in mitosis. It is the human ortholog of proteins required for anchoring distinct sets of cytoskeletal fibers to centrioles in unicellular eukaryotes. CCDC61 monomers are comprised of an N-terminal globular head domain, a centrally located coiled-coil, and a C-terminal region. These monomers homodimerize through two homodimerization domains, the N-terminal globular head domains and long extended alpha-helical coiled-coil regions. These CCDC61 homodimers assembles into linear filaments. This model corresponds to the N-terminal head domain of CCDC61, which is structurally related to other XRCC4-superfamily members, XRCC4, XLF, SAS6, and PAXX.
Statistics
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PSSM-Id: 409001
Aligned: 57 rows
Threshold Bit Score: 121.172
Created: 20-Jul-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
homodimer
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Structure:6HXY; Homo sapiens CCDC61 forms a homodimer, contacts at 4A
  • Comment:both the head domain and coiled-coil domain are involved in homodimerization

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #                #                                       # #  # #             
6HXY_A          9 VVQEEMKF------RGSEFAVKVEMAe-------------------------rLLIVEISDVvtADQWRGEFGPaYIEDL 57   Danio rerio
XP_001298262    2 QDRIEAVF------NIRDHHYRIGIEtrs----------------------skSFGVDLLDEdiWERWSSDFNAsYIKEI 53   Trichomonas v...
OMJ88734        7 LASGQKVF------HSKVYWIDLYADd-------------------------nKMRIKVKEKltNSYFIGEFTIgFIENL 55   Stentor coeru...
XP_004997493    5 SDRGRIVVggedgeEDNVYDVEYGLGt-------------------------tEFFVRIEHTvtTEVWANTFSReYIEQL 59   Salpingoeca r...
XP_009030269    3 MLVSMNKLi-----NDELYNITLDCLt-------------------------rNLTVQIENLttHEVWQNEYSNaFIEDL 52   Helobdella ro...
OHT09691       18 EFDIVVII------KDRKYRFSGRVLnh------------------------dSFTLKIINEdyTKRWAADFSAnYIDDL 67   Tritrichomona...
CBY43665        1 MFSGYIES------KGDLYEITLSTSv-------------------------dGFRVRVRLE--RQSWANSFSPqYISEL 47   Oikopleura di...
OHT10404        2 DEVIEAAFv----eKGIHYKIRLTVQqt------------------------dSFSILLIDEdqPERWEGIFTGqIISKL 53   Tritrichomona...
EPR62300       97 RISARLVL------RQCYYVLTCQLSsppptspgprpppssssfssssaaprcFLSVSARHEasGAVYFGRFPHsFIEEM 170  Toxoplasma go...
OHT02294        1 MFFLIFYFv-----RISIFLLSLMSIessiekiietnkk--kyrltahcnqseSISIQIVTEdfTQRYACEISAaYVEEI 73   Tritrichomona...
Feature 1                                                                                         
6HXY_A         58 TRKTGNFKqFPVFCSMLESAVHks----------sdSVTLDLLTYSDLELLRNrkagvvgrpr---aqpqspalsAKRYL 124  Danio rerio
XP_001298262   54 SRKAGAEKrISIFWRMLQTAIEgt----------snEISFDVLSTADVNSLQTklnpny----------kskdteDKRYI 113  Trichomonas v...
OMJ88734       56 THKAGSSKkFSVFLNMLSSAIQgi----------ssAVVLGLESHTDLEKLRSkplq---------------gnaKTIYL 110  Stentor coeru...
XP_004997493   60 THKAGSFKeLSVFYRMLAKGIDrqs---------peVVSVALYDQHDLQQLQKtrrlgesv-------aangteaHNKYL 123  Salpingoeca r...
XP_009030269   53 TEKTGRYMkFTTFCSLLKCAIEqd----------dsCSYVDILTFSDLEKLRKekvkdvereienisdsaasllsSKIYL 122  Helobdella ro...
OHT09691       68 TTKAGCVKrISVFWKMLINIASge----------sqTASLEILTTEEINEIRKnknkpv-----------eedqdSKLYI 126  Tritrichomona...
CBY43665       48 TKKTGCHKeFDTFITLLAKAITgke---------ntECSLQILTPNDLESLRSgsnsgrqp------sghlrppgDRRYL 112  Oikopleura di...
OHT10404       54 TDSVGSKKkVTIFWKMLQNAVLkn----------shEVSYTILTQDEINELTNksasqsss------rtsnsnmnDARFF 117  Tritrichomona...
EPR62300      171 TRRTGRFAsMKAFWELLLQALRrragqtqssekneqDVTVNLWDVTDLEALRRsaggess---------sslsseDKHFL 241  Toxoplasma go...
OHT02294       74 TVRSGGLKrLPVFWKMFFLGSNks----------skNLKIEIFSAYELQQLSTtls----------------dnmDKIYV 127  Tritrichomona...
Feature 1                             
6HXY_A        125 ILIYTVEFDRIHYPLPLPYL 144  Danio rerio
XP_001298262  114 ILTQTTEFEKINFPLSLKQN 133  Trichomonas vaginalis G3
OMJ88734      111 ILTYLSEFDKVFYPLPLKQQ 130  Stentor coeruleus
XP_004997493  124 VLTYRTEYDRVQYPLPLLYA 143  Salpingoeca rosetta
XP_009030269  123 ILTYLQEDQKIHYPLALTRG 142  Helobdella robusta
OHT09691      127 ILTQTSEYDKFHYPLPLPFM 146  Tritrichomonas foetus
CBY43665      113 LLTVHNNYEKNHFPLSLLPE 132  Oikopleura dioica
OHT10404      118 ILEQINEFDHTKFPLRLYKK 137  Tritrichomonas foetus
EPR62300      242 IITHRVEARKVHYPLALQRQ 261  Toxoplasma gondii GT1
OHT02294      128 ILTQISDFDIIRYPLPVPMV 147  Tritrichomonas foetus

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