2J3T,7B6D


Conserved Protein Domain Family
Sybindin

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pfam04099: Sybindin 
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Sybindin-like family
Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses.
Statistics
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PSSM-Id: 282019
Aligned: 13 rows
Threshold Bit Score: 169.417
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2J3T_C         3 VHNLYLFDRNGVCLHYSEWHRKk--------------------------------------------------------- 25 
O43041         1 MHALIIINRAGSLIFQREFGSSp--------------------------------------------------------- 23  Schizosaccharom...
XP_001728397   3 VFSLVIINKAGGLIYNRTFHEGg--------------------------------------------------------- 25 
Q9AWN0        33 AQVLYVFNRGGVCLLYREWHRPlr-------------------------------------------------------- 56  Japanese rice
Q9SYB8        23 AHMMYVFNRNGVCLLYKEWNRPlh-------------------------------------------------------- 46  thale cress
Q9VA95         3 IFNLYIFDKFGTLLHYAEWNRTkk-------------------------------------------------------- 26  fruit fly
Q9Y5R8         3 VHNLYLFDRNGVCLHYSEWHRKkq-------------------------------------------------------- 26  human
Q9LZ97         4 IYSLYIINKSGGLIFYKDCGt----------------------------------------------------------- 24  thale cress
O77358         1 MYSLYVNNQHGTLVYQKHFSEEi--------------------------------------------------------- 23  Plasmodium falc...
Q9ES56         3 IFSVYVVNKAGGLIYQWDSYSPraeaektfsypldlllklhdervlvafgqrdgirvgha---vlaingmdvngkytadg 79  house mouse
Q9VLI9         3 IYGVYIVSKSGGLIFNLDNNVPriehektftypldlvldydskkvsvsfnrkdginvghv---lvavngmpvngvtlddg 79  fruit fly
Q20100         5 IQHLFIINRAGSLIYSWEARTEtpevektyewpidvhleevdqkavvvfgekdgiklryyvksvngetvsgtrlqlgaqq 84  Caenorhabditis ...
7B6D_C         3 IFNLYIFDKFGTLLHYAEWNRTk--------------------------------------------------------- 25 
2J3T_C        26 --------------------qAgIPKEEEYKLMYGMLFSIRSFVSKMSP------------LDMK-----------DGFL 62 
O43041        24 ---------------------T-ALTPNEYLVLAGTIHGVHAISTQISP------------LPGS-----------SGIQ 58  Schizosaccharom...
XP_001728397  26 --------------------lN-KISTNDYLVLAGTFHGVHAITARLNPvksaperplsnsIPGVpggiltrpeppSGLE 84 
Q9AWN0        57 ----------------------tLDPTQDQKLMFGLLFSLRSFTAKIDPttaekgnlgvplLPGQg----------CSFY 104 Japanese rice
Q9SYB8        47 ----------------------tLNPQQDHKLMFGLLFSLKSLTAKMDPvnadkgnlgvpqLPGQg----------CSFH 94  thale cress
Q9VA95        27 ---------------------sgITREEEAKLTYGMLFSIKSFVSKISPhdp-----------------------kegFL 62  fruit fly
Q9Y5R8        27 ---------------------agIPKEEEYKLMYGMLFSIRSFVSKMSPldm-----------------------kdgFL 62  human
Q9LZ97        25 --------------------kG-RMDTNDSLRVASLWHSMHAISQQLSP------------VNGC-----------SGIE 60  thale cress
O77358        24 -----------------------KLNSNEEIRLASMLHGISTISEKINVyslye--kktniFQSLe---------kKGIE 69  Plasmodium falc...
Q9ES56        80 kevleylgnpanypvsirfgrP-RLTSNEKLMLASMFHSLFAIGSQLSP------------EQGS-----------SGIE 135 house mouse
Q9VLI9        80 rdvrttldapenypinlkfsrP-KMTTNEKIFLASMFYPLFAIASQLSP------------EPKS-----------SGIE 135 fruit fly
Q20100        85 vnvleylqeedhypvtvkfaaP-TVSTNEKIILSSMFHSLFTIAVQLSP------------CQKS-----------SGVE 140 Caenorhabditis ...
7B6D_C        26 --------------------kSgITREEEAKLTYGMLFSIKSFVSKISP------------HDPK-----------EGFL 62 
2J3T_C        63 SFQTSRYKLHYYETPTGIKVVMNTDLGVgPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137
O43041        59 LLEAGTFNMHILQTHTGMKFVLFTEKKT-TNARLQLQKFYELYSDYVLKNPFYTLEMPIKCQLFDEQLKRYIDSH 132 Schizosaccharomyces ...
XP_001728397  85 VLESENFRLQCFNTLTGVKFLLFTDTTQ-TNVDVIIRRIYDLYSDYVMKNPFYQLEMPIRCDMFDRKLLSYIREv 158
Q9AWN0       105 SFKTNTYKLNFLESPSGIKLILITHPRTgDQRDTLKHIYN-LYVEYVVKNPLYAPGTPIKCELFNKHLDQYVKTL 178 Japanese rice
Q9SYB8        95 SFRTNTYKLSFMETPSGIKIILVTHPKTgDLRESLKYIYS-LYVEYVVKNPIYSPGSPIKSELFNTALDQYVRSI 168 thale cress
Q9VA95        63 YYKTNRYALHYLETPSGLKFVLNTDTTAiNVKELLQQLYAKVWVEFVVRDPLWTPGTVVTSELFQSKLDEFVRQS 137 fruit fly
Q9Y5R8        63 AFQTSRYKLHYYETPTGIKVVMNTDLGVgPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137 human
Q9LZ97        61 LLEADTFDLHCFQSLPGTKFFVVCEPGT-PHMESLLRYIYELYTDYVLKNPFYEIEMPIRCELFDINLTQAVQSD 134 thale cress
O77358        70 TIEGDGFKIQCYDTLTGIKIFIVHKDDLnIEMNTYLKRVYELYSDIILKNPFYDIDMPIRSAVFNEQIEKLFSNI 144 Plasmodium falciparu...
Q9ES56       136 MLETDTFKLHCFQTLTGIKFVVLADPRQ-AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVA 209 house mouse
Q9VLI9       136 ILEADTFTLHCFQTLTGIKFIIISETGL-NGIDLLLRKVYELYSDYVLKNPFYSLEMPIRCELFDNKLQELLAQV 209 fruit fly
Q20100       141 VLETTQFKLFCLQSRTGVKFVVITSAASnIAADSLLSKMYELYTDFALKNPFYSIDMPIRAQKFDEAIKTLLERA 215 Caenorhabditis elegans
7B6D_C        63 YYKTNRYALHYLETPSGLKFVLNTDTTAiNVKELLQQLYAKVWVEFVVRDPLWTPGTVVTSELFQSKLDEFVRQS 137
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