Conserved Protein Domain Family
CtIP_N

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pfam10482: CtIP_N 
Tumour-suppressor protein CtIP N-terminal domain
CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control. This N-terminal domain carries a coiled-coil region and is essential for homodimerization of the protein. The C-terminal domain is family pfam08573.
Statistics
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PSSM-Id: 463107
Aligned: 18 rows
Threshold Bit Score: 124.011
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ELK04390       4 FMESLNRLRDIHEREVLSLQNKLLELNSERCREARRVEELCAKNQQLREQQKALKENVRVLENRLRAGLCDRCSVTQELA 83  
XP_008108369   6 FGDFLNKVKEIHEKEVHALQTKLNDITSERSQDAQRIEELFAKNHQLREQQKALKENVKVLENRLRAGLCDRCQVTQELA 85  
XP_012786963  20 FKDLWTKLKECHDKEVQGLQVKVTKLKKERILDAQRLEEFFTKNQQLREQQKVLQETIQVLEDRLRAGLCDRCAVTEEHM 99  
F1R983        20 LQELLTAVRDLHDTALQELQAKIAKLKKERCLDAQKLSEFHSKNQHLREQQKIQQEKIRQLEDRLRSGPCDRCTVKEKQI 99   zebrafish
XP_023182425  18 FEDVWRQLKVCHQNTVQEYQSKVSKLKNDRCLDAQKLEVFYNRNQQLKEQNKSLQDSISLLEDRLRVAECNRCAVLEEKL 97  
2_pfamImport   1 FDKLWGQLRETHREALQDAEDKVSKLKTARYLDAESLEAFHFRTQQLKEENKTLQETVSRLEERLGTGECDRCAVLEENL 80  
XP_015209244  22 FSELLVRMKDCHDSEVQGLQIKISKLKKERCLDAQRLEEFYTKNQQLREQQKALQDNVKVLEDRLRAGLCDRCAVTEEHM 101 
XP_019477774   6 FAEFLNKLKEIHEKEVQGLQTKLTELTTEKCRDAQRIEELFAKNHQLREQQKVLKENVKVLENRLRAGLCDRCMVTQELA 85  
XP_019662013   4 FTESLNRLKEVHENEVRGLQNKLLELNSERCRDAQRVEELCAKNHHLREQHKALKENVRVLENRLRAGLCDRCMVTQELA 83  
XP_002747791   4 FMESLNRLKEIHEKEVLGLQNKLLELNSERCRDAQRIEELFAKNHQLREQQKTLKENLRVLENRLRAGLCDRCMVTQELA 83  
ELK04390      84 RKKQQEFESSLVQSLQHVFVLTvtfaaNEMTRLQEENETLKQEVT 128 
XP_008108369  86 KKKQHEFGKAHFQSLQHIFILT-----NEVNKLREENKSMREELK 125 
XP_012786963 100 RKKQQEFENIRQQNLKLITELM-----NEKNTLQEENKKLSEQLQ 139 
F1R983       100 KKTNTELEDNNQRNLSVISELE-----AERKTLTDENRRLSLELE 139  zebrafish
XP_023182425  98 KSSQD-------QNLNVITKLK-----NENKNLEDENRNLQAELQ 130 
2_pfamImport  81 RNNQD-------QNVRLVAKLK-----NERERLEDENRKLHAELQ 113 
XP_015209244 102 KKKQVEFENVRQQNLRLITELM-----NERNSLQDENKKLCQQLD 141 
XP_019477774  86 KKKQNEYENSHFQSLQHIFILT-----NEMSRLKEENKILKEELK 125 
XP_019662013  84 RKKQQEFENSLLQSLQHVFILT-----NELNRLQGENETLKEEVK 123 
XP_002747791  84 RKRQQEFESAHLHSLQRIFILT-----NEMNTLKEENETLKEEVK 123 
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