Conserved Protein Domain Family
REP

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COG5655: REP 
Replication initiaton protein REP (rolling circle plasmid replication) [Mobilome: prophages, transposons]
Statistics
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PSSM-Id: 444376
Aligned: 15 rows
Threshold Bit Score: 184.537
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AFZ24206       1 MLKpntlrefvsaqaSDKSVnisslekyqqSQNILSLTEV--SPIGKTWEKHRNNADQVSEYYAKSg----dDAFNEYAW 74 
NP_348496      1 MDF------------ENETL----------EKMEQKRIDY--NRKYANWYKQMSKDMQQEKHLAYA------ETLKKKGE 50 
WP_041636604   1 MEK---------------------------------------------YTEKKKRNQVFQYFIKK-------FVGEKQMD 28 
WP_011512170   1 MGFs----------mYDDEAdla-----evAKSPDHLVDG--SHDLTKHNSKHRLTDQIADRYAQH------AEHKKRAA 57 
WP_014216273   1 M--------------------------------SKVFKDVttNGKVRPWRERKIENVRYAEYLS--------ILEFKRAH 40 
WP_014426088   1 MRMiil-------qeNEQDCkle-----iiEGTGEVLEDLsgTGRKRPWSERKSESVELLNLFETArkidesVISQTRLQ 68 
WP_015157504   1 M-------------------------------SDFYLSDL--SEKDKPWDYHRALTDKIRDLYRGT-------EFASYAE 40 
WP_015205648   1 MPE------------QTDTEq--------kNTDAPSLSDL--SSRDKPWDKHRSNADKVSAYYVGS-------EFQGYSD 51 
WP_001085408   1 MAKk-----------NQDEI----------------------TGKLQP---KKKQNIKIYEFIKK-------KMSESGKE 37 
WP_040107879   1 MKN-------------NNSI----------------------LAQKQHITELKNNQTRIQRLF---------SFNQKIQN 36 
AFZ24206      75 RLRTCSDWLEFRLVPAEStdilNFKLANARFC-RVRHCPVCQWRRSLMWKAKAYKVLPQVVTDypKYRWLFITLTVRNC- 152
NP_348496     51 RIKSCMNIWLWDIYRKNK----LLDLQKVNRCmNNRFCPNCRKFNLSCAIHNLKKPLNDLLLD--GYYPYLVTLTIPNV- 123
WP_041636604  29 LIKDCNTFLAFVTDKEQT----KKKLYKNNMC-KNRFCPMCAWRKARKDALGLSLMMQYI-KQeeKKEFIFLTLTTPNV- 101
WP_011512170  58 RMYDCGKVLAFDRYRIGDceepFRVLANGSFC-RERLCPFCMKRNSAWLHVRLTQAVERFLKQnpQHQAALLTLTMKNM- 135
WP_014216273  41 DVRGCGEILRFRKIGE------HLKLYQTWFC-KKRLCPLCNWRKSMKNSSQLKQIIAEAVVRepKGRFLFLTLTVKNAy 113
WP_014426088  69 ALKDCGSWLTFAQQADG-----TRRLANANFC-RLRLCPLCGWRRSLKLFSQVSKISDAI-LAekKARFIFVTLTVENV- 140
WP_015157504  41 RSAVCAKVLEFALTATDDge-rVFRLQAARFC-RVRHCPICQWRRSLMWKARFIKALPSIAADhpTARWIFLTLTVKNC- 117
WP_015205648  52 RAYFCSELLDFRLTPDQDegvyKLKLAAARFC-RVRHCPVCQWRRSLMWKAKAYKILPRIIKKypTHRWLFLTLTLRNC- 129
WP_001085408  38 LFKSCSIFNEFLATKDKK----KKKRVKGNDC-KNRFCPICAWRKAGKDAVKIATMMEAI-KIeeKKEFLFLTLTTPNI- 110
WP_040107879  37 NICDCGRYIQLNTKRNYDtaevKKEVEQAYTC-KYRYCPLCNYYRICSVSPQMVKALED--QQkkGNKILFLTLTVPNC- 112
AFZ24206     153 KISELRENLNEINKAFKRLTELKA----------WPA-----KGWVKSIEVTKGKDG----------------------- 194
NP_348496    124 LGKELKRTIEKMNKAFKKLFGAYSydlqgkttkgFKDrlicfEGALKVLEITYNEES----------------------- 180
WP_041636604 102 KAEELEDEIKKYNLSFGKLVKRKK----------VKAm---mKGYVRKLEITYNKQR----------------------- 145
WP_011512170 136 TEEKLRYWLDRLLKAFRKLMRYKR----------VSAa---vSAWYRTTEITRNPET----------------------- 179
WP_014216273 114 SAEELKSSLRALTKAFGKLSRYKK----------VSKn---lLGYLRSTEITVNEHD----------------------- 157
WP_014426088 141 KGEELRATIKRMNEGFKCLVQDKKgmaa---satFRAn---lMGYMKAIEVTYNTKR----------------------- 191
WP_015157504 118 PLPELRENLTSMNKAWKRICDRKV----------FPA-----LGWVKSFEVTRSKDG----------------------- 159
WP_015205648 130 KITELRETLKHMHESFKRMTKLKA----------FPA-----IGWIKSTEVTRGKDG----------------------- 171
WP_001085408 111 KADMVKSEIDRFNKAFKKLFDRRN----------IQRs---iKGYIRKLEMTYDKERfiteemynnkkrkayydsrglkv 177
WP_040107879 113 DYSETRKTISNMNRAYKRLTEQN-----------LFKn---iEAWIRTTEVTFNTKG----------------------- 155
AFZ24206     195 -------VSAHPHLHILAMVQ-----------PSYFSH---GY----LSQARWVSLWQQCLRidyqpvmDVRAVAKNHDP 249
NP_348496    181 -------NTYHPHFHCLFFSQqydqelfikntPGEFSNkrnSYnfysLLDIQIMKLWTMYFK-------EIRVNEKNYNN 246
WP_041636604 146 -------DDFNPHFHVLIAVN-----------KSYFTDk-rYY----ISQKEWLEMWRDVTGmpeitqvHVQKIKQNNN- 201
WP_011512170 180 -------GEFHPHIHLLVFFP-----------PEYFKRakgLY----ITQAEWAGMFKKALQvdytpvcDIRAMpgvggg 237
WP_014216273 158 -------GSYNQHLHVLLFVR-----------SSYFKSs-dSY----INQEEWTRLWQKALKvdyepvvHVQVVKANKRK 214
WP_014426088 192 -------NDFHPHIHCIFELA-----------PKYFRGkegGY----LTHEDWRVMWRNVMKldyepqvDVRAIKNTTA- 248
WP_015157504 160 --------TAHPHFHVLMMVP-----------PSYFKK---DY----ISQQKWRELWQHALRadyepvvDVRAIKPKSGS 213
WP_015205648 172 --------SAHPHFHCLLMVA-----------PGYFGK---NY----IRQDEWVEMWRQSLRidynpvlDVQAIKKGQSP 225
WP_001085408 178 ddhnpnyDTYNPHFHVLLCVD-----------KNYFKRk-eLY----IKQEEWLEMWREVTDmpeitqvHIQKVELIRE- 240
WP_040107879 156 --------EAHPHFHIALSVN-----------ENYFKKg--NY----KTTREWSQIWSKAYKsdnqlivDIRKAYKSKKH 210
AFZ24206     250 ---------------QKLIPEILKY 259
NP_348496    247 tklqdcficdiremdSAGIVEVLKY 271
WP_041636604 202 ----------------KELYEMAKY 210
WP_011512170 238 aplddlgrkslfevckyvcepgmff 262
WP_014216273 215 gtd----------slQASAEETAKY 229
WP_014426088 249 ----------------KAVAEVAKY 257
WP_015157504 214 idpad-----pskplLATIKETLKY 233
WP_015205648 226 ---------------ASLVPELLKY 235
WP_001085408 241 ---------------GNAVAEVAKY 250
WP_040107879 211 skrd--------ldiHSTVKELAKY 227
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