1LNU,1K8I


Conserved Protein Domain Family
MHC_II_beta

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smart00921: MHC_II_beta 
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Class II histocompatibility antigen, beta domain
Class II MHC glycoproteins are expressed on the surface of antigen-presenting cells (APC), including macrophages, dendritic cells and B cells. MHC II proteins present peptide antigens that originate extracellularly from foreign bodies such as bacteria. Proteins from the pathogen are degraded into peptide fragments within the APC, which sequesters these fragments into the endosome so they can bind to MHC class II proteins, before being transported to the cell surface. MHC class II receptors display antigens for recognition by helper T cells (stimulate development of B cell clones) and inflammatory T cells (cause the release of lymphokines that attract other cells to site of infection).
Statistics
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PSSM-Id: 197989
Aligned: 49 rows
Threshold Bit Score: 62.6208
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1LNU_B        39 GECYFTNg-T-QRIRYVTRyiYNREEYVRYDSDVGEHR--AVTELGRPD---AEYWNSQPEILERTRAELDTvCRHNYE 110 house mouse
XP_001377337  27 SSCVLDEdgSaKDFSYCIS--FNKAMLTCWDSETKMMVtvNFGILQGIAeqiTNYTNHQSNFISRLSNGLQD-CASHTK 102 gray short-taile...
NP_001035571  27 STCVLDDdgDpKDFSYCIS--FNKDLLTCWDPLQASMIprEFGVLNGLArylSQFLNNNSYLIQRLSNGLQN-CAAHTQ 102 cattle
AAL34339      32 SSCLLDDagTpKDFTYCIS--FNKDLLTCWDPEENKMApcEFGVLNSLAnflSQHLNQQDTLMQRLRNGLQN-CATHTQ 107 chimpanzee
XP_849737     27 SSCLLDDdgTpKDFTYCVS--FNKDLLTCWDPDEAKMVpyEFGTLNVLAnylSDYLNQQEYLHQRLSNGLQD-CATHTQ 102 dog
NP_942035     27 STCLLDDegTpMDFTYCIS--FNKDLLACWDPEEGQIVpcEYGVLFKLAefiSNILNKEEGLIQRLKNGLQD-CSTHTQ 102 Norway rat
CAD19195      32 CRCIYSSp-DlSDMVYIDSkyFNKYLFAQFNSTLGRYV--GFSEYGIRN---AEYWN-NGTFVEQERNEVERfCKHNAQ 103 zebrafish
XP_002661942  17 SQCIYSYp-DlSDMVFILSfnFNKWMFLQFNSTVGIFV--GYTEQGVKF---AENFNKNEAYLQQLRAEVDIfCRHNAE 89  zebrafish
NP_001005943  29 FECIYSTs-DySDMVYLVSlsFNKFVDVKCNSTEVKCV--GFTEQGVKF---ADNYNKDQGILQDLKASVDT-CRHNAE 100 zebrafish
AAA50046      26 QQCFYSTs-DySDMVYLASysFNKVVDTQFNSSVGKFV--GYTEQGLIF---AENFNKDQAYLHQLKAQVDTfCRHNAQ 98  zebrafish
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