6R7G


Conserved Protein Domain Family
Flexi_CP

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pfam00286: Flexi_CP 
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Viral coat protein
Family includes coat proteins from Potexviruses and carlaviruses.
Statistics
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PSSM-Id: 425583
Aligned: 8 rows
Threshold Bit Score: 188.789
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6R7G_F  22 SNAVATne-dLSKIEAIWKDMKVPTDTMA-QAAWDLVRHCADVGSSAQTEMIDt--gPYSNgISRARLAAAIKEV--CTL 95  Potato virus X
Q04572  83 SNSVAP----KATIREILDTLQAKRQNATpKDLFSLAWACYHNGSSRFVNLNT----DAPCgITHADLKTLWKAS--ATL 152 Shallot virus X
B1PS80 111 vNGIASkaelTAVAETWASRLNVPKENSA-VLAQEIAIHCYHNGSSEQTDFNLk--sSQVAgLNLEAAVGVIKEI--LTL 185 Lolium latent virus U...
Q9QEE7 140 TNSIANpkqtEAIGKAWVRILQIDPANVF-LYAIDLARACADAGSSPEADIIGanedLNPV-VERNALAGVVRDF--CPL 215 Indian citrus ringspo...
P17529 117 SNNMATse-dMMRIYVNLEGLGVPTEHVQ-QVVIQAVLFCKDASSSVFLDPRGsfewPRGA-ITADAVLAVLKKDa-ETL 192 Potato virus M (strai...
Q64966 231 agvVASnq-kIRAVGVALIGMGIPEHQLT-EVGVYLARHCADVGASDKSALLGt--fPGSD-ITLEEVGTMIKQTegCTL 305 Apple stem pitting vi...
Q6YNQ5 220 SNSMASpntvMNILNLITTSANV---TAV-TCGIEFAIACAHQGSSRYTRHTGt--sTGGS--TFELIAAHVKEH--CTI 289 Botrytis virus X NZL/...
Q91QZ1 176 SD-IANde-hLKRVQL---TLKITDTKVFsRTGFEFAISCGSRSTSDKDPYDGiikiSGKS-HMRKDIAYAIRTSg-ITV 248 Citrus leaf blotch vi...
6R7G_F  96 RQFCMKYAPVVWNWMLTNNSPPANWQAQGFKPEHKFAAFDFFNGVTNPAAIM-PKEG---LIRPPSEAE 160 Potato virus X
Q04572 153 RQFCSYYAKSCYVSGKQQKKPPANWSRKGYPEEAKFAGFDFFNAVLSESSPA-PPGG---MRFKPTQAE 217 Shallot virus X
B1PS80 186 RQFAAYYATFVWNWGIKNEIPPANWVAKGYTDETKYAAFDTFSYVGSPLGLRiTPT------RKPTNNE 248 Lolium latent virus USA/US1
Q9QEE7 216 RAFCAYYSRVVWNLMIKADQPPANWMKSGIDEGAKFAAFDFFHGVLSPASLYvPLE------RHPTAAE 278 Indian citrus ringspot virus K1
P17529 193 RRVCRLYAPVTWNHMLTHNAPPADWAAMGFQYEDRFAAFDCFDYVENTAAVQ-PLEG---LIRRPTPRE 257 Potato virus M (strain Russian)
Q64966 306 RQYCAFYAKHVWNLMLQTQSPPANWVGKEFKFETRYAAFDFFFGVESTASLE-PADG---LIRLPTQAE 370 Apple stem pitting virus PA66
Q6YNQ5 290 RQFCSYFAKVVWNHLLTHATPPVNWAKHGFTLDSRYAAFDFFDAVTNAAALP-PKNG---LIRAPTSEE 354 Botrytis virus X NZL/Howitt
Q91QZ1 249 RQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIPtEADGsvrLIRPPTNEE 317 Citrus leaf blotch virus FRA/SRA...
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