Conserved Protein Domain Family
7tmA_CX3CR1

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cd15186: 7tmA_CX3CR1 
CX3C chemokine receptor 1, member of the class A family of seven-transmembrane G protein-coupled receptors
CX3CR1 is an inflammatory receptor specific for CX3CL1 (also known as fractalkine in human), which is involved in the adhesion and migration of leukocytes. The CX3C chemokine subfamily is only represented by CX3CL1, which exists in both soluble and membrane-anchored forms. Membrane-anchored form promotes strong adhesion of receptor-bearing leukocytes to CX3CL1-expressing endothelial cells. On the other hand, soluble CX3CL1, which is released by the proteolytic cleavage of membrane-anchored CX3CL1, is a potent chemoattractant for CX3CR1-expressing T cells and monocytes. Chemokine family membership is defined on the basis of sequence homology and on the presence of variations on a conserved cysteine motif, which allows the family to further divide into four subfamilies (CC, CXC, XC, and CX3C). Chemokines interact with seven-transmembrane receptors which are typically coupled to G protein for signaling.
Statistics
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PSSM-Id: 320314
Aligned: 4 rows
Threshold Bit Score: 420.008
Created: 16-Dec-2013
Updated: 25-Oct-2021
Structure
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Aligned Rows:
  next features
Feature 1:putative chemokine binding site [polypeptide binding site]
Evidence:
  • Comment:based on structures of chemokine receptors with bound ligands (chemokines, peptides, or chemical antagonists/agonists)
  • Comment:Small-molecule chemical ligands tend to bind deeper within the receptor core, compared to a peptide ligand neurotensin, which binds towards the extracellular surface of its receptor.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #                                                #  #               #  ## 
P49238     32 VFLSIFYSVIFAIGLVGNLLVVFALTNSKKpksvTDIYLLNLALSDLLFVATLPFWTHYLineKGLHnamCKFTTAFFFI 111 human
P35411     33 IFLSIFYSLVFTFGLVGNLLVVLALTNSRKsksiTDIYLLNLALSDLLFVATLPFWTHYLishEGLHnamCKLTTAFFFI 112 Norway rat
A6QNL7     33 VFVVILYSLVFAFGLVGNLLVVFALINSQRsksiTDIYLLNLALSDLLFVATLPFWTHYVineQGLHhatCKLITAFFFI 112 cattle
XP_418820  32 IFLPLFYIAVFALGLAGNVMVVLAIVKEGSkksiTDIYLMNLAVSDLLFVISLPFWASNTvrgWTLGtipCKVVSSLYYI 111 chicken
Feature 1                                                                    ######       #  #
P49238    112 GFFGSIFFITVISIDRYLAIVLAanSMNNRtvQHGVTISLGVWAAAILVAAPQFMFtkqkenECLGDYPevlqeiwPVLR 191 human
P35411    113 GFFGGIFFITVISIDRYLAIVLAanSMNNRtvQHGVTISLGVWAAAILVASPQFMFtkrkdnECLGDYPevlqeiwPVLR 192 Norway rat
A6QNL7    113 GFFGGIFFITVISVDRFLAIVLAanSMSNRtvQHGVTTSLGVWAAAILVATPQFMFtrekenECFGDYPeilqeiwPVIL 192 cattle
XP_418820 112 GFFGGMFFITVISIDRYLAIVRAtySMRSRtiKHSLLITCGVWATAVLVSVPHFVFsqmfenDCIPVLPqelmniwPVFC 191 chicken
Feature 1     #                                                      #      #  #          #   
P49238    192 NVETNFLGFLLPLLIMSYCYFRIIQTlfsCKNHKKAKAIKLILLVVIVFFLFWTPYNVMIFLETLKLydffpsCDMRKDL 271 human
P35411    193 NSEVNILGFVLPLLIMSFCYFRIVRTlfsCKNRKKARAIRLILLVVVVFFLFWTPYNIVIFLETLKFynffpsCGMKRDL 272 Norway rat
A6QNL7    193 NTEINFLGFLLPLLIMSYCYFRIMQTlfsCKNHKKAKAIRLIFLVVVVFFLFWTPYNVMIFLQTLNLydffpkCDVKRDL 272 cattle
XP_418820 192 NVELNTAGFFIPVCIICYCYCGIIKTllyCKNQKKARAIKLTLAVVIVFFLFWTPYNVLIFLETLRHyelfisCNQIKSL 271 chicken
Feature 1     #  ##  #                         
P49238    272 RLALSVTETVAFSHCCLNPLIYAFAGeKFRRYL 304 human
P35411    273 RWALSVTETVAFSHCCLNPFIYAFAGeKFRRYL 305 Norway rat
A6QNL7    273 KLAISVTETIAFSHCCLNPLIYAFAGeKFRRYL 305 cattle
XP_418820 272 DYAMHLTETIAFSHCCLNPLIYAFAGeKFRKYL 304 chicken

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