5N8L,3LLH


Conserved Protein Domain Family
DSRM_TARBP2_rpt1

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cd19890: DSRM_TARBP2_rpt1 
first double-stranded RNA binding motif of the RISC-loading complex subunit TARBP2 and similar proteins
TARBP2 (also known as TAR RNA-binding protein 2, or trans-activation-responsive RNA-binding protein (TRBP)), participates in the formation of the RNA-induced silencing complex (RISC). It is part of the RISC-loading complex (RLC), together with dicer1 and eif2c2/ago2, and is required to process precursor miRNAs. TARBP2 contains three double-stranded RNA binding motifs (DSRMs). This model describes the first motif. DSRM is not sequence specific, but highly specific for dsRNAs of various origin and structure.
Statistics
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PSSM-Id: 380719
Aligned: 7 rows
Threshold Bit Score: 119.467
Created: 24-Oct-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 19 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Structure:5N8L; Homo sapiens TARBP2 in complex with siRNA, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          ## ##  ##  ##      #       ### # #               ####  #              
5N8L_A        15 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGG 86  human
3LLH_A        12 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGG 83  human
Q7SXR1        27 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVSVGDINCTGHGPSKKAAKHKAAEAALKMLKGG 98  zebrafish
Q15633        27 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGG 98  human
Q6GPZ1        26 PGKTPISLLQEYGTRVGKTPVYDLLKAEGQAHQPNFTFRVSVGDINCTGQGPSKKAAKHKAAEVALSLLKEG 97  African clawed frog
EMP30223       6 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDISCTGQGPSKKAAKHKAAEVALKLLKGG 77  Green sea turtle
XP_007910254  27 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDINCTGQGPSKKAAKHKAAEAALKLLKGG 98  elephant shark

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