Conserved Protein Domain Family
NP-I_spr0068

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cd09007: NP-I_spr0068 
uncharacterized subfamily of the nucleoside phosphorylase-I family
This subfamily is composed of uncharacterized members including Streptococcus pneumoniae hypothetical protein spr0068. The nucleoside phosphorylase-I (NP-I) family members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases such as purine nucleoside phosphorylase (PNP, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases such as AMP nucleosidase (AMN, EC 3.2.2.4) and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). Members of the NP-I family display different physiologically relevant quaternary structures: hexameric (trimer-of-dimers arrangement of Shewanella oneidensis MR-1 UP); homotrimeric (human PNP and Escherichia coli PNPII or XapA); hexameric (with some evidence for co-existence of a trimeric form) such as E. coli PNPI (DeoD); or homodimeric such as human and Trypanosoma brucei UP. The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.
Statistics
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PSSM-Id: 350158
Aligned: 299 rows
Threshold Bit Score: 171.513
Created: 23-Jul-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative active
Feature 1:putative active site [active site]
Evidence:
  • Comment:based on nucleoside phosphorylase-I family members with structures; reactions involved includes phosphorolysis and hydrolysis; includes hexameric, trimeric, and dimeric quaternary structures
  • Comment:for many, the neighboring subunit of a dimer contributes residue(s) to the protein-ligand interaction

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               ###  #                                                #  #            
Q8DRK6     31 LPKKCVYAFLGEEIDRYArevgANCVGEFvsa---------tktYPVYVINyk---geEVCLAQApVGSAPAAQFMDWLI 98  Streptococcus pneu...
EGL83755   29 VAPTVIGSWSGGLIRSLVka-tGATVSEHwly---------gtnRPLYTGRvh---gkPVSFICFpVGAPGTIMMMEEMI 95  Caldalkalibacillus...
ETX05379   35 LRQTVVLTLIPELERRLLkt-lGNPQPNP---------------HPIQRQTwynpeacAFSVMTSpMGAPIAVMLLEQLI 98  Candidatus Entothe...
BAS26488   36 VGRTLIYSFIGRVGQMGGrl-gAHEVEGWvy-----------gpGTLFTAGag---egSVSVARAiAGAAMTVGHLEEFI 100 bacterium HC45
KYH37150   29 GLRAAIITFTSEAFTLVKd--aLDRYEGLe-------------rVPLGCLRavm--sgEVGVFQSyFGSAASAMLMEILV 91  Candidatus Bathyar...
OGO50069   42 VRPTVVASFFPQFTRYLAerngARPSERMwg-----------epRRLFVVDe------SLSLLTLpVGASAAAMLAEEMI 104 Chloroflexi bacter...
OGP86796   52 LETLALITFTSQDLRGLVq--wTRQANSIeawr--------krnPRIYRGE-------GWIGVQSpYGAPGTIMLLEELV 114 Deltaproteobacteri...
OGS43230   16 EPEFVSTTFQATNLGVDCa--iLSMIGNMygfmikcpefgdrrmAPEINGSvegrigrGIAAYHSsVGAPAAAMLMETLI 93  Euryarchaeota arch...
APM39224   27 IAPIVIGSWDGNLIKTIAeefqLEPMANWtk------------nSIVYNWTtn---grDVTFVALpVGAPSAVSTLEQLI 91  Clostridium kluyveri
OLD12077   27 IAPIVVGSWDLGTVKSLAe--rVGAVSSPswww--------gprFPLYNGEid---gkKVSIVCLpLGAPATVMVMEELI 93  Crenarchaeota arch...
Feature 1             ######                                                               # #
Q8DRK6     99 GYgVEQIISTGTCGVLADie-enAFLVPVRALRDEGASYHYVAPCRYMEMQpe-aIAAIEEVLedrgipYEEVMTWTTDG 176 Streptococcus pneu...
EGL83755   96 ACgAKTFIGVGFAGSLQPhipigSFIIPTHCIAEEGTSKHYTEAGEVEMKPstrlLDKLTKTCrqagrkYFTGLQWTTDA 175 Caldalkalibacillus...
ETX05379   99 ALgARQFIYLGFCGALNPayrigDCFVPTTGIREEGTSYHYLPAEVVPAASgplnALVLDEAVaqg-faVQSGPIWTTDA 177 Candidatus Entothe...
BAS26488  101 HLgVRRIIGLGWAGSLDPampvgSLFVAGEAVREEGTSYHYAEASVPAVPTgp-iAQALLEAGrrvghpVATGRHWSTDG 179 bacterium HC45
KYH37150   92 AGgVKYFMVMGAAGSIKRevkagDVVVPTWGLREEGVSYHYVEPDVMVKPDps-aLRTLEKSLaeagldFKTGGIWSTDA 170 Candidatus Bathyar...
OGO50069  105 ACgARDFLIVGAAGSLQHdlpvgSVVLPTAALREEGTSHHYLPPDAPAQATpe-lADALRAAWqhp-seLRAGLHWTTDA 182 Chloroflexi bacter...
OGP86796  115 AFgVRRAVFLGYCGTIQEgisigDLILPMGAIREEGTSYHYLPKGEKSFPDpe-vQSKLSDWLggi-lpFHRGNIWTTDA 192 Deltaproteobacteri...
OGS43230   94 ASgVKKIVMFGYAGSLSNecrvgDILVPDWGVREEGTSYHYLPGSVGVRASdm-lVTRLCESLgr--rhFHRGGIWSTDA 170 Euryarchaeota arch...
APM39224   92 VCgAKVFIGIGFAGSLQPsipvgSIVIANNCIREEGTSYHYLKDNSEGLPSkr-lLEQLQKAFcneaihSTTGAIWTTDA 170 Clostridium kluyveri
OLD12077   94 ACgTRIFLGLGLAGSIQPeapvgTCFIPTSCIREEGTSRHYLSSDEGLRPAqr-lVRALEKARvkkgvvAYTGPLWTTDA 172 Crenarchaeota arch...
Feature 1     #       #          ####                  #  ###              ##             
Q8DRK6    177 FYRETAEKVAYRKEEGcaVVEMECSALAAVAQLRGVLWGELLFTADSLADLDQyds--rdWGSEAFNKALELSLAS 250 Streptococcus pneumoni...
EGL83755  176 IYQEYIDKIERYREQGvlGVDMETSAMYALGQLRNVEVCNLLVVSDEVWHNWNp-----gFHGDALQEAVQAAQKV 246 Caldalkalibacillus the...
ETX05379  178 LYRETALKIRRFQAAGihAVDMEMAALFAVAQFRACEVGAILIVSDECYHPTWrpgfhapHFRRGCRDAVALSIAA 253 Candidatus Entotheonel...
BAS26488  180 VYREVRTKVERMARNGvrAVDMETSAMYILGRFRSVEVANLLVISDELFHPWRpaf-gtpELRAAEERSLDVVLAC 254 bacterium HC45
KYH37150  171 PFMETLSKVREYSDMGvlVVDMEMTALMAVGMRRGVKLAGVVTVTDELYSGDWkpmfdsdVVASSEKRVAYAVVKA 246 Candidatus Bathyarchae...
OGO50069  183 PYREHKEKIAAYRDAGvlSVDMEVSALYAVAQHRGVGCAALLAISDELYEPWRvgf-smpEFQRAIARCGFAALGA 257 Chloroflexi bacterium ...
OGP86796  193 PYRETHEKIKRYRAEGvlGVEMEMAAAFAFGKAKGISVGAILMVSDQVREEEWrigffspKIRSTRKRVIEVLIHH 268 Deltaproteobacteria ba...
OGS43230  171 AYRETRGKILKYAKKGimAVDMESTGLMAIAMYRSAEFAPLVVISDELFGDRWvpdfdspKVRRASMTACRAALRA 246 Euryarchaeota archaeon...
APM39224  171 IYRELKSKVEDYKKKGiaAVEMETSALYVVGKYRGIDVCNILAISDELWTDWNp-----qFGSEKLQNTIQTIKNV 241 Clostridium kluyveri
OLD12077  173 PYREMVTTIENYRLRDilGVDMETSAMYGLGVYRNVEVCNFLVVSDELWRDWRpai-grpELADALKKAEEVVLEA 247 Crenarchaeota archaeon...

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