1L8R


Conserved Protein Domain Family
DHD_Dac

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cd21081: DHD_Dac 
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Dachshund-homology domain found in the retinal determination protein Dachshund and similar proteins
Dachshund proteins act as transcription factors involved in the regulation of organogenesis. They may be a regulator of SIX1, SIX6 and probably SIX5. The Dachshund-homology domain (DHD), also known as the N-terminal Ski/Sno/Dac domain, adopts a mixed alpha/beta structure containing a helix-turn-helix motif, similar to features found in the forkhead/winged-helix family of DNA binding proteins. It contains a conserved CLPQ motif and can bind co-factors. Its structure suggests that it may also bind DNA. It has been postulated that Dachshund proteins may bind to chromatin DNA via their DHD domains.
Statistics
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PSSM-Id: 410784
Aligned: 25 rows
Threshold Bit Score: 187.953
Created: 12-Feb-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1L8R_A          5 NECKXVDLRGAKVASFTVEGCELI-CLPQAFDLFLKHLVGGLHTVYTKLKRLEITPVVCNV----------EQVRILRGL 73   human
CDS34290       15 SQVHILEYRGAQLAAFNVEGRGLLiCLPQAFELFLKHFVGGLHTVYTKLKRLDIQPVVCNV----------EQVRILRGL 84   Hymenolepis m...
AJV21306       57 NICKMIEYRGAKIAAFTVDGRELI-CLPQAFDLFLKHLVGGLHTVYTKLKRLDITPIVCNV----------EQVRVLRGL 125  Terebratalia ...
AAQ11368       50 NVCRMIDYRGAKVAAFTVDGREVI-CLPQAFDLFLKHLVGGLHTVYTKLKRLDITPVVCNV----------EQVRILRGL 118  Florida lancelet
EFX90187      118 NECKLVDYRNQKVAAFVIHGETML-CLPQAFELFLKHLVGGLHTVYTKLKRLDIVPLVCNV----------EQVRILRGL 186  common water ...
NP_001021129   82 VAAKLIKFRGHNVAAFDINGKEMI-CLPQVYEVFLKNMVGGLHTVYTKLKRLYIHPMVCNV----------EQVRALRSL 150  Caenorhabditi...
AMB26751       57 NVCKLIEYRGAKVAAFVVEGAELI-CLPQAFELFLKHLVGGLHTVYTKLKRLDITPVVCNV----------EQVRILRGL 125  Leptochiton a...
EEC10548      103 TDCRLIDYRGAKVAAFYVAGEYLL-CLPQAFELFLKHLVGGLHTVYTKLKRLDITPIVCNV----------EQVRILRGL 171  black-legged ...
NP_723969     215 NECKLVEYRGQKVAAFIISNETML-CLPQAFELFLKHLVGGLHTVYTKLKRLDIVPLVCNV----------EQVRILRGL 283  fruit fly
VDK46610       31 QTVKLYEYRGKRVAGFEVFGRQMI-CLPQLYEIFLKNLVGGLHTVYTKLKRLEIRPVVCSVeqrkihanptEMVRALRSL 109  herring worm
1L8R_A         74 GAIQPGVNRCKLISRKDFETLYNDCT 99   human
CDS34290       85 GAIQPGVNRCKLIAPREFDILYADCT 110  Hymenolepis microstoma
AJV21306      126 GAIQPGVNRCKLISPKEFDVLYEDCT 151  Terebratalia transversa
AAQ11368      119 GAIQPGVNRCKLLSKEEFDVLYEDCT 144  Florida lancelet
EFX90187      187 GAIQPGVNRCKLLSCKDFDILYRDCT 212  common water flea
NP_001021129  151 GAIQPGVNRCKLLKTSDFEKLYDDCT 176  Caenorhabditis elegans
AMB26751      126 GAIQPGVNRCKLLSCKDFDTLYEDCT 151  Leptochiton asellus
EEC10548      172 GAIQPGVNRCKLLSCKDFDALYKDCT 197  black-legged tick
NP_723969     284 GAIQPGVNRCKLLCCKDFDILYRDCT 309  fruit fly
VDK46610      110 GAIQPGVNRCKLISSADFDRLYGDCH 135  herring worm
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