Conserved Protein Domain Family
YTH1

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COG5084: YTH1 
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Statistics
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PSSM-Id: 227416
Aligned: 10 rows
Threshold Bit Score: 170.052
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
19859393 258 EAHLNSNHISPASFGSGIRTRNIFNPESMSLGLKPPILNRSYSASMAPGFSMNTFTATGNLGRPTKSPSVPTSVGSNKSR 337 fission yeast
19075052   1 -------------------------------------------------MKTPTFSFEAYVSDKLGLHEE--DEVYCIPY 29  Encephalitozoon cun...
19173488   1 MRNVCRFFIEGKCKFGSKCKYDHVRYTSLVDPPQWIYSSYRGLDLMEISPEEVRFALMCGDMKEVLDNFWIGNYMALCGE 80  Encephalitozoon cun...
19074760   1 ---------------------------------------------MLPKLNVPTRLNKSYLMEYRAHK--------TIPR 27  Encephalitozoon cun...
19113874   1 ------------------------------------MTDYIKDKAIAADFSSVQFRFDNYLKQNFNFG-----R--SALL 37  fission yeast
19113042 139 VKRSPAAAFDEMRNKLVGKTNYKSIFDKSTSNSTVTSNQFNKPTQNSPFNSFSNNNNSFNNNQQANDIFGAPTTSAFTSQ 218 fission yeast
19112205 137 ENKIQQRLSDGTKQLVTIDGLQYITGVSDTKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEVGNSP----SAVYCRYY 212 fission yeast
19075909  86 PKCALSHALPGNTNLPNGTSTNTMASMAANGGASSVASKQMGANQISPSLSSKTMKNPADKANNTTATDVRGNTATSPYF 165 fission yeast
6325203    1 --------------MDAFENMSVSNHPGGNARRNSQSANEMLASQIQDFQNIPRSFNDSNANVNLSKNCTVGNQLPFSSR 66  baker's yeast
6325364    1 ------------------------------------MS------LIHPDTAKYPFKFEPFLRQEYSFSLDP-DRPICEFY 37  baker's yeast
19859393 338 KFPGINGSTLtATPSSLENLYplsSRRSVPNLISSLGTSPSTFSSQFLKSTDRTHS-FTSKLQSFNPVGTSLLASSLGTS 416 fission yeast
19075052  30 QTNSCRDP---NCPKQHVK-----LSTAVVCKHWLRGLCKKGIKCEFMHEYDLSR---MPECYFFSSYGECMN-PECNYI 97  Encephalitozoon cun...
19173488  81 MDLLESDARIaSVSNRHVDPR---ENPDVFMAPFDVDRVSGTIRQMRAQGARPLEKrQGDTRRGDGGWGSTSLGSPRPHP 157 Encephalitozoon cun...
19074760  28 ATQKPREHER-STPN----------YRTILCKFFLMNSCKHGDSCTYSHDTS------KFPCKAFHLKGNCTR-KDCPFS 89  Encephalitozoon cun...
19113874  38 NSGNGRDS----GSK----------MGSVVCKHWLRGLCKKGEQCDFLHEYNLKK---MPPCHFYAERGWCSNGEECLYL 100 fission yeast
19113042 219 LNASPFSQNTsSNSFTGSNPVqnnPSSFGSSSFGSATSGPSAFGGISQPNSSFVNSgQGIPNSSFSSFSQVASGFSQSQN 298 fission yeast
19112205 213 NANGICGKGA-ACRFVHEP------TRKTICPKFLNGRCNKAEDCNLSHELDPRR---IPACRYF-LLGKCNN-PNCRYV 280 fission yeast
19075909 166 PFSRSPGRHSgNSTINGMMTTpnfLSSGVNSRSVDEFNNSSSGFPSSLNGIPIASPpLATSPTSFSLASSASSTNLGGSK 245 fission yeast
6325203   67 QQKIIMEHLL-ITKNNSQQQK---DYSHVPCKFFKMGNCQAGSSCPFSHSPDIISSaNNLPCKYF-AKGNCKFGNKCVNA 141 baker's yeast
6325364   38 NSREGPKSCP-RGPLCPKKHVlpiFQNKIVCRHWLRGLCKKNDQCEYLHEYNLRK---MPECVFFSKNGYCTQSPDCQYL 113 baker's yeast
19859393 417 QEDsvnydiPDEFANEEDFIPN-----------------SlQELLTPEELERKMSHGDEAVSSSSAsrfmskvssnlNSG 479 fission yeast
19075052  98 HID------PNSSSKECPWYN---------------------RGFCRNGASCKNKHVRK-K----------------LCY 133 Encephalitozoon cun...
19173488 158 TGDgg---yKDKRYGWSRQESG-----------------AgSAWFQGNKAGDRAGHGGYRSGYGGE-----------PRG 206 Encephalitozoon cun...
19074760  90 HE-------PLSGAAMEEMIN----------------------EKEEEPTLLFKSTLL---------------------- 118 Encephalitozoon cun...
19113874 101 HLD------PSKQVGVCAWYN---------------------MGFCPLGPICRGKHVRKPR----------------PCP 137 fission yeast
19113042 299 VNDpssifgPTVASGFGIQNQPqqsa----------fqnLnTQFSLPNNSQPVFGHTSLTQPVNPNgftvq--ppatFMQ 366 fission yeast
19112205 281 HIH------YSENAPICFEFAK--------------------YGFCELGTSCKNQHILQ-------------------CT 315 fission yeast
19075909 246 GLLf----qQMTSENNRDYFSR-----------------R-PTLLNTYGNRCSSTDTLSSLSRLTSq---------dPLK 294 fission yeast
6325203  142 HVL------PNGFKMNSKEPIDitppsqnnylsharsasFsTYTSPPLSAQTEFSHSASNANYFSSqylmy-spqksPEA 214 baker's yeast
6325364  114 HID------PASKIPKCENYE---------------------MGFCPLGSSCPRRHIKK-V----------------FCQ 149 baker's yeast
19859393 480 NPTPYNSYNGTPTSSrfVAFFDRHRQESEKATPPSLNKVSQEPLTATTPKNLGNLTAISETLENGQTLKSNMASSIEKSK 559 fission yeast
19075052 134 NYFLGFCPKGLN----------------CDYGHPKFNISPGREI---SRSDIIQKPSNLASS------------------ 176 Encephalitozoon cun...
19173488 207 FPREPSYPKGNDSEYrqKGSWGYGKGTSKKYSKPEDEFDIQDTPSSFPGAYSGGTPRAGGAWTHNSEALGDRQNASRGSG 286 Encephalitozoon cun...
19074760     --------------------------------------------------------------------------------     Encephalitozoon cun...
19113874 138 KYLAGFCPLGPN----------------CPDAHPKHSEPPHPPQ---KRKDW---------------------------- 170 fission yeast
19113042 367 QPQGPFVPPNTTFESpfANVTSKISASGFSNDNPANKNIIQTPMFGSSNTIDGPINPIGASSIQTLDDQVEMSNSNQNLA 446 fission yeast
19112205 316 DYAMFGSCNNPQ----------------CSLYHGAVSADVPEQTEAPISKTAGSINPEDSGSEIGSNSLESNLDFISV-- 377 fission yeast
19075909 295 ASLPLQSPPLAPKTG--VSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLNHQMDVSDEE 372 fission yeast
6325203  215 LYTEFFSPPSSSSSYinYSYNNSNINAYSPVSSSSSNIWQEQGQTTLSNPSVNQNLRYRTGPAIQEESDNEIEDLLIHNF 294 baker's yeast
6325364  150 RYMTGFCPLGKDE---------------CDMEHPQFIIPDEGSKLRIKRDDEINTRKMDEEKERRLNAIINGEV------ 208 baker's yeast
19859393 560 TSTEVVA 566 fission yeast
19075052     -------     Encephalitozoon cuniculi
19173488 287 DEEFIEE 293 Encephalitozoon cuniculi
19074760     -------     Encephalitozoon cuniculi
19113874     -------     fission yeast
19113042 447 FPPEMIQ 453 fission yeast
19112205     -------     fission yeast
19075909 373 QRFLSTP 379 fission yeast
6325203  295 NSRYCHE 301 baker's yeast
6325364      -------     baker's yeast
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