Conserved Protein Domain Family
RepA

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COG5534: RepA 
Plasmid replication initiator protein [Mobilome: prophages, transposons]
Statistics
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PSSM-Id: 444285
Aligned: 98 rows
Threshold Bit Score: 287.536
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_035683098   1 MDdhk-------------------------------------------------tdqEN--------------AELLDRP 17 
WP_012592915   1 M-------------------------------------------------------------------------TQTSDP 7  
WP_013481200   1 MAprkskistgpetedlfriptakasaqaearaasaipddrdeeterghlddanpvkRQ--------------ALLPNRR 66 
WP_011382087  69 rqaiiaaeeaaaevyvmhgetrstpnlfsdiqpelgfladiqsevkkveedrskkreRS--------------KLLPARY 134
WP_013723326   1 MShhn-------------------------------------------------tdsESatlfplgrgdepasGNILASA 31 
WP_014752744   1 --------mddysnmgkeysqsfweeieqlenigmeevsqiisenmsvslpeklllrrikarddsikgetekkHLLPERH 72 
WP_066137035   1 MIsdt--------------------------------------------------tnLD--------------SLLPDRY 16 
WP_066137035   1 MIsdt--------------------------------------------------tnLD--------------SLLPDRY 16 
WP_094037315   1 M------------------------------------------------------------------------PLLPDRH 8  
WP_119797782   1 MTdgtak---------------------------------------------nrvrnLK--------------TLRPRKH 21 
WP_035683098  18 VQ-LALRLD--SPLRGD-VNNDRALMAYSLFGLSKDKVESLPTY--DDGKVKIEVRAPRDVGVATIWDKSVLIYAVSLLR 91 
WP_012592915   8 AQ-GELFIC--EIANWP-VKDDIASMEVPIFSLAKKKDTNTREY--RRGAKVVRVIPSSV-GAATVFDKDLLLYIASQIV 80 
WP_013481200  67 PEdLLYFLI--EPLEVV-LKDDMASMESPIYSLSKSIDTTIIRY--EHNGNWLEIVPSVK-GRATIYDKDLILYCTSHIV 140
WP_011382087 135 TN-QDFFVA--DILGYS-LKDDHATMEAPVFSLKTQKDLTPWEWtsKDGTKHIEVSPSVKYGRATQHDKDILIFVTSQMT 210
WP_013723326  32 VQ-PDLFVVleAIHDWP-VKDDVSSMEYPIFSLSKNRDTRIRVY--SRAGRSIRIIPSAV-GAATVFDKDILIYCISQIV 106
WP_014752744  73 QD-GDFFIA--DGIDLPyVRDDIASMEYPIFALKA-GDTRTLRF--DHNNVKTVITASAEYGRATIFDKDVWIYCVSKLM 146
WP_066137035  17 PQ-GDLFIC--DIADAV-LKDLVAQMEHPFYSLSKKPETTVRRY--EHNGNWIEIVPSVK-GLATIYDKDILIYCISQLI 89 
WP_066137035  17 PQ-GDLFIC--DIADAV-LKDLVAQMEHPFYSLSKKPETTVRRY--EHNGNWIEIVPSVK-GLATIYDKDILIYCISQLI 89 
WP_094037315   9 PQ-KDFFIL--DIADVV-PKDDTASMEHPLFSLATKPDMRHLVY--QNGENRLEIVPSGL-GLPTIKDKDILIFCISQLM 81 
WP_119797782  22 QQ-IDFFIA--DEVDIVnFRDELASMEHPFFALKG-GDTRVREY--VNGNVSVTISPNVKNGMATIFDKDVWIYAISKLC 95 
WP_035683098  92 EKMAEGKmgPEVGKLHFTTSDLQRIVGKTAGGSAYDKIEGALERLQGTQIKTNLEAG-GEGESGAFSWISDYKLLYr--- 167
WP_012592915  81 EARNQEL--PVSRTVQIESIDFLVGTERGDGRASFERIVDMLRRLRGTTIETNIETG-GVRQTEGFSLIDTYKILSehkr 157
WP_013481200 141 RAVNEGR--PVSPTIRFSAYDFLQFANRTKSGVAYNSLRDTLVRLNGTRITTNIVTG-KERHESVFGLIEHGTIISe--- 214
WP_011382087 211 EALNRERpdTQSRAVRFTVHNYLVATNKPTGGVEYQRLERALDRLKGTTIKTDIKTG-NKRVKEAFGILDSWAIIEr--- 286
WP_013723326 107 RGHDAGI--KVSRRVRVDVYPFLLGTRRSTGGAAYERVVDMCRRLKGTTIETNVKTN-EKEQLEGFGLIEDYRVTTw--- 180
WP_014752744 147 QAKFKNL--PISRNIRFSTYDFLISTNRQTGGSQYEQFKQSLERLSGTRISTEIETG-GLRQADFVGLIDNARVIEe--- 220
WP_066137035  90 AKKNKGE--AISKRVRITARELLMFTNRGTSGKDYEAMCEALDRLDGTRIRTNIKRG-DEEQFSAFGLIDSASVARk--- 163
WP_066137035  90 AKKNKGE--AISKRVRITARELLMFTNRGTSGKDYEAMCEALDRLDGTRIRTNIKRG-DEEQFSAFGLIDSASVARk--- 163
WP_094037315  82 HMKNRGE--KIGKRVRFSARELSISTNRPIGGNHYKRLEQAFKRLQGTQFTTTIRTG-GKREVRIFSLVDEAGFVMq--- 155
WP_119797782  96 QAMYKEQ--PISRTVRFTAYDFFVTTNRDKGGRSYKELEKALDRLAGTRITTNIQHSvDKREAIGFGLIDSWHVVEe--- 170
WP_035683098 168 -------------rGKKdGerQ-VRGLTLVLSNWVVRAALGNNLLTYSEDYFAL-KPIEKRLYEIARAHLGHG-TAFWMA 231
WP_012592915 158 ietghdpetnrvvrKEV-S--R-VLRFSVTISEWLFNGLMNYEVLTLDRGYFSLtKSIERRLYEIARKHCGDQ-PLWKVN 232
WP_013481200 215 --------------TRD-G--R-MKEIEVKLSEWVFRGIANAEVLTLHQDYFRLrRPLERRLYELARKHCGSK-EEWAMS 275
WP_011382087 287 -------------sSSD-E--R-MIAVEITLSKWLYNAIHAHEVLTIHPDYFRLrKPLERRLYELARKHCGSKqSSWKIG 349
WP_013723326 181 --------------TKN-G--KgALELELTISEWLYRAAMDFDILTLHPDYFSLgQALERRLYELARKHCGDK-AWWEIS 242
WP_014752744 221 --------------DIQ-G--R-TVAVEITLPNWLYRSVEHNEVLAISKDYFRLrKPIDRRIYEIARKHCGNK-PEWKIS 281
WP_066137035 164 -------------fGLD-G--R-LLWCEITLSDWVFNAVNQNECLTLHRDYFRLrKPLERRIYEIARKHCGRQ-PSWSIS 225
WP_066137035 164 -------------fGLD-G--R-LLWCEITLSDWVFNAVNQNECLTLHRDYFRLrKPLERRIYEIARKHCGRQ-PSWSIS 225
WP_094037315 156 -------------eEGL-W--R-LDYCEVVLSDWFMRAIEANDVITISNDYFRLrRPLERRLYEIGRKHCGGQ-PKWHIG 217
WP_119797782 171 --------------QKG-Kl-E-VGMVEVTLPDWLYEAVTKTKVLKISSDYFRIrKAIDRRLYEIARKHCGSQ-HQFQIS 232
WP_035683098 232 LEPLRKRVGSDNDLRKFKNALGPVLQAD----RIPGYGVRIVEAAEykelmtgrgasiarvlnaDLPViFWRKDAGEPeS 307
WP_012592915 233 IDLLADKIGTTQERYRFRDELRQAITGD----RLPEYHIALDSKKSp-----------------DDVV-FYTRNPS---- 286
WP_013481200 276 MELCMKKAGSKGPLKEFRRMVREIVEDNeqtdHFPDYSVAIEg---------------------DSIV-FRRKARAKLgG 333
WP_011382087 350 LELLREKCGAQSHIRAFRNQVQEISNAH----TLPEYHLIYEREa-------------------DQVT-FYVKNQQKLiS 405
WP_013723326 243 LPLLLEKTGSSQTLRRFKQEIKEIVERD----PLPDYRMFLDESVKp-----------------NKLV-IMTRDNAKLvC 300
WP_014752744 282 LELLHKKTGITDVLRNFRVAINSLAKAD----VLPDYHVKFEKEs-------------------DSVI-FSNRDPDIGaK 337
WP_066137035 226 IELLHKKTGSKSLLKQFRYLLKDLARTN----HLPDYTVSLEDg--------------------DMIL-FTNRATIKAiE 280
WP_066137035 226 IELLHKKTGSKSLLKQFRYLLKDLARTN----HLPDYTVSLEDg--------------------DMIL-FTNRATIKAiE 280
WP_094037315 218 LAKLQEKTGSNAPLKKFRLNIRQIIEDD----HTPFYRMELTPD--------------------DLVI-FRPRSPQSNlS 272
WP_119797782 233 LEKLYLKTGSTAMKDKFKYNIKQLAKIN----DLPDYEISYEAEk-------------------DYVI-FTNRNQDSEkA 288
WP_035683098 308 w--------iDIPR 313
WP_012592915 287 ----------KLSK 290
WP_013481200 334 rkepakvaqpKLNP 347
WP_011382087 406 sylcr--------- 410
WP_013723326 301 ea-------nKAGK 307
WP_014752744 338 vmlkranlfn---- 347
WP_066137035 281 alss--rdipQLDD 292
WP_066137035 281 alss--rdipQLDD 292
WP_094037315 273 pe-------iQLPE 279
WP_119797782 289 qk-------sKMRE 295
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