2BB3


Conserved Protein Domain Family
Precorrin-6Y-MT

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cd11644: Precorrin-6Y-MT 
Click on image for an interactive view with Cn3D
Precorrin-6Y methyltransferase (also named CbiE)
CbiE (precorrin-6Y methyltransferase, also known as cobalt-precorrin-7 C(5)-methyltransferase, also known as cobalt-precorrin-6Y C(5)-methyltransferase) catalyzes the methylation of C-5 in cobalt-precorrin-7 to form cobalt-precorrin-8. It participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. CbiE functions in the anaerobic pathway, it is a subunit of precorrin-6Y C5,15-methyltransferase, a bifunctional enzyme: cobalt-precorrin-7 C(5)-methyltransferase (CbiE)/cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating) (CbiT), that catalyzes two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. CbiE and CbiT can be found fused (CbiET, also called CobL), or on separate protein chains (CbiE and CbiT). In the aerobic pathway, a single enzyme called CobL catalyzes the methylations at C-5 and C-15, and the decarboxylation of the C-12 acetate side chain of precorrin-6B.
Statistics
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PSSM-Id: 381171
Aligned: 672 rows
Threshold Bit Score: 100.646
Created: 12-Sep-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:SAM binding site [chemical binding site]
Evidence:
  • Comment:SAM = S-adenosyl-L-methionine
  • Structure:2BB3; Archaeoglobus fulgidus precorrin-6y methylase CbiE binds S-adenosyl-L-homocysteine, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                     #                                                ##
2BB3_B        27 VGSGTCrg-qTTERAKEIIERAEVIYGSRRALELAGvv--ddSRARILRsfkgdEIRRIXEEGr------eREVAVISTG 97  Archaeoglobus f...
NP_661290      8 IGLSDStephLDPSAIEAIRAHRIFAGGTRHREIVGallpsaYRWITIAp----PIDEVLSQLag----adEPVVVFASG 79  Chlorobium tepi...
PQJ73702       6 IGISNHaiplLNADVLDLIEQSSIFSGGKRHYQLVKsflpkhHTWIEISg----KMDALIKQYkn----mdASIVVFASG 77  Polaribacter bu...
WP_088653639  11 VGMPDAaplaWATVHRNLLLSHHWFAGGTRHYELVKhllpptHHWIEIRm----PLKDFLKQLsk----vdGTVVIFASG 82  Geofilum rhodop...
PIF02207       6 IGIYDKkp-eFSEEQQKAIANTLHFAGGKRHYELVKkwlpenANWVMITa----PLATFFDELkk----fgGNWVVFASG 76  Draconibacteriu...
BAG32836      21 LGMSDDphpfFPPAAMTAIASGKVFSGGKRHHEIVRgllpadAEWIDITv----PLDDVFARYre-----fEEIVVFASG 91  Porphyromonas g...
CQB85831       6 IGIDDNreqfFRPEVLKVLQEGYYFSGGKRHYEIIKpylpseHEWIEVVp----PMGALMDQYrq-----lDDLVVIASC 76  Chlamydia trach...
CDD12973      18 IGMDDNpqpkHIEVIIKNVKHDNIFSGGKRHYEIVKpf--lpADAVWIEik--aPINAVLAEYsrli-qegKVIVSFVSG 92  Parabacteroides...
CDD05336       7 IGLSDShrlcLTPEVMKIISAGRVFSGGMRHHEIIAsm--lpTRYVWINit--iPITDVLEKYkh-----hDELVIFASG 77  Prevotella sp. ...
WP_096431522   7 IGIPDRmevsLSDEVKEVLQNHHYFSGGKRHRDLVAsy---lPENAKWI-----DIVVPLEGTfmvyeqidQPIVVIASG 78  Marinifilaceae ...
Feature 1        #  ##                     ##                                           ##       
2BB3_B        98 DPXVAGlgRVLREiaedVEIKIEPAISSVQVALARLkvdlSEVAVVDCHAKdfdaeLTELLKY---RHLLILADSHFPLE 174 Archaeoglobus f...
NP_661290     80 DPFFYGfgATLQKrfpgASIQSFPTFHSLQMLAQRClipyQSMRHASLTGRsw-eeLDCALIAg-eRLIGVLTDTRKTPT 157 Chlorobium tepi...
PQJ73702      78 DPFFYGfgNTLQRlipnAKLKAYPYFSSIQLLCHKTqtnyNSLKSVSIHGRdw-saLDEALIQg-nELIGVLTDTKKTPS 155 Polaribacter bu...
WP_088653639  83 DPLFFGigNTIQRsfpeATIENHPAPGSLQLLAMQLrqnfGLFRCVSLTGRpw-keLDRCLLMg-eRKLAILTDRKKTPA 160 Geofilum rhodop...
PIF02207      77 DPLFFGigNTLKRvltdADFVFYPVFNSLQLLAHRFeinyGKFKTVSLTGRdw-heFDKALLQg-eKRLAILTDRTNTPV 154 Draconibacteriu...
BAG32836      92 DPLFFGfaNTVMNrlpdAEVTVYPTFNSLQMLAHALcmpyHDMRIVSLTGRpw-heFDRALIEr-aEKIGILTDHEHTPS 169 Porphyromonas g...
CQB85831      77 DPLFNGigETIMRhipeATVKVYPSFHSLQMLAHRAllpyQSMHEVTLTGRpw-heFDRALIQresMIGLLLDRKEHTPT 155 Chlamydia trach...
CDD12973      93 DPFFFGfaSTIRKnllgVGMKVFPYFNSLQMFAHHEqipyENMHAVSVTGRpw-heLDRALLEy-rPLIGVLTDRVHTPR 170 Parabacteroides...
CDD05336      78 DPLFYGfaNTVKRsfpeVQMKVFPTFNSLQLLAHKLnlayNDMYTASLTGRpw-drLDEALIRg-eRLIGCLTDKNKTPH 155 Prevotella sp. ...
WP_096431522  79 DPLFFGigNTIKRrfpdTKIKVYPYFNSLQLLAHEFqlayGEMTICTLTGRdw-vnLDQELIQg-kKCIGVLTDKKKTPA 156 Marinifilaceae ...
Feature 1                           # ##                        ####    
2BB3_B       175 RLGKRR----------VVLLENLCx-EGERIRegnads----ielesDYTIIFVE 214 Archaeoglobus fulgidus DSM 4304
NP_661290    158 EVARRMldfgy-ssyrMAVGESLGg-SDERVTrctleea--sgmqfgKLNCLLLE 208 Chlorobium tepidum TLS
PQJ73702     156 EISKRMlqygf-dnysITIGEALDg-NEERIEqldlttc--snkthnNLNCVLLK 206 Polaribacter butkevichii
WP_088653639 161 IIAQRMleygy-ghyhMTVGERMGg-TAEKITegtldei--kdksfdHPNCLLLQ 211 Geofilum rhodophaeum
PIF02207     155 SIAKRMlefgy-dnyrMFYGECLGg-ENERTAelslhev--anlsfsHPNCFLLE 205 Draconibacterium sp.
BAG32836     170 AIAMRMldygy-edytMSVGTRMGn-PQEQCLdtlslqe-aadrdfeRPNCVILS 221 Porphyromonas gingivalis ATCC 33277
CQB85831     156 TVAQRMldygy-dnykAYVGELLGnkEEERVSelslsem-akrefsyPYNMILVE 208 Chlamydia trachomatis
CDD12973     171 AIAKRMmeyhldrdytMWVAEHLGnpKKEKIYkiysiee-isemsftNPNCVLLM 224 Parabacteroides merdae CAG:48
CDD05336     156 EIWQRMhtygy-dnyeMYVGENLGneEKESIGqydpa------kgysTPNCIILE 203 Prevotella sp. CAG:592
WP_096431522 157 TIAARMleagf-dnykMIVGSKLG--GDEQYCteislqnvidkdfahPNCLILIQ 208 Marinifilaceae bacterium SPP2

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