Conserved Protein Domain Family
55

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PHA02547: 55 
RNA polymerase sigma factor; Provisional
Statistics
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PSSM-Id: 222868
Aligned: 24 rows
Threshold Bit Score: 218.807
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
161622560   3 EIKLTKNNYVNNKELLKAITQWKTELRENTDPNK-IVRQNDVIGLAIMLIAEGLSKRFNFSGYTqsWKQEMIADGIEASI 81 
162290191   2 KKNAKKQHYVNNQDLLTALITYRRKVAIAKEKGLpKPRVNNYIGGCFLKIATHLSYRPNFINYM--YKDDMICDGVENCI 79 
109290034   1 ------MKYVDNEVLYQNICKWKQDMRDA---GH-HIKMPDAIGIDIMKIAKGFTGYYKFAGYTqnWKDGMISDAVEAVV 70 
37651528    1 ------MNYVDNKALYQNICKWKQDMREA---GH-HIKMPDSIGIDILKIAKGFTGYWKFTGYTqnWKDGMVADAVESVI 70 
34419299    1 ----MKNHYVDNKALYASLCEWKDEMNKNPDA---TIPVPDVVAISIMKISENLSRRYNFSGYTatWKEEMIGDAIEHCL 73 
38639956    1 -----MANYVDNEELYQAFVAWKEKLKENPTE-----RMPEFIGGAIMKIAEGFTHHWRFNRYTdtWKEAMVGAAIDVCL 70 
58532925    2 TRTKNKEYYVNNKDFLTAIVEYRKRVQLAEKEGRpRPRVTNYLGECFLKIATHLSYKPNFVNYM--FREDMICDGIENCL 79 
66391850    1 ------MNYVDNKALYQNICKWKQDMREA---GH-HIKMPDSIGIDILKIAKGFTGYWKFTGYTqnWKDGMVADAVESVI 70 
61806320    5 ASTKKKQHYVDNKKFLEAIIKYKEKVDIAEAKGLpKPRVNNYIGGCFLKIATHLSYRPNFINYM--YKDDMVCDGIENCI 82 
255929017   7 AKRKQTEYYVNNKEFLAAITEYRIKVQRAKELGKpRPRVTNYIGECFLKIATHLSYKPNFVNYM--FREDMICDGIENCL 84 
161622560  82 KGLHNFDETKYDNPHAYITMACFNAFVQRIKKERKEMAKKYSYFVHNVYDANdddmvgiadETFIQDIYDKMTQYETSLV 161
162290191  80 QYIDNFDPEKSNNPFAYFTQIVYYAFLRRIQKEKRQMDIKEKILEKSGYDEV---------FSVDGDVSSEYNQIKSRIA 150
109290034  71 KGLINFDEDNYKNPHAYITQACYRAFIGRIKYEKHEMAIKYRYFLTNVYDEHdddmsrlvdENFIQDIHGKLVAYESSLK 150
37651528   71 KGLVNFDEHNYKNPHAYITQACFNAFIGYIKSEKREMATKYRYFLTNVYDEHdsdmsriadEGFIQDIHDKLVVYEASIK 150
34419299   74 RYIKNFDTDKYNNPHAYITRICFNAFVQRIKKERKDTAIKYKVFLCDSSNYTvege--etdFEFLQQMLERVNSYESGKT 151
38639956   71 RYCKNFDTQRYSNPHAYISMICARAFFNRIKFMKQEEAAKYKYFLEHVHDGEdedmaklvdVAFYNDMMTKANDFEAKRK 150
58532925   80 QYIDNFDPEKSSNPFAYFTQIIYYAFLRRIQKEKKQLEIKGKILERSGHQEVmytekfegdMAGMNMSYSDMGSIKENIE 159
66391850   71 KGLVNFDEHNYKNPHAYITQACFNAFIGYIKSEKREMATKYRYFLTNVYDEHdsdmsriadEGFIQDIHDKLVVYEASIK 150
61806320   83 QYIDNFDPTKSRNPFAYFTQIVYYAFLRRIAKEKRQMDIKDKILEKSGYDHV---------FSVDGDASADYNQIKNRVE 153
255929017  85 QYIDNFDPEKSKNPFAYFTQIIYYAFLRRIQKEKKQLEIKGKILERSGYDEVmhtdtydgtMSGMNASYSDMGSIKENIE 164
161622560 162 KAPGS 166
162290191 151 INSKR 155
109290034 151 SKKKD 155
37651528  151 SKKKD 155
34419299  152 AKAQP 156
38639956  151 IKPKK 155
58532925  160 TRMNR 164
66391850  151 SKKKD 155
61806320  154 MNQKR 158
255929017 165 TRMNR 169
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