Conserved Protein Domain Family
Gemini_coat

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pfam00844: Gemini_coat 
Geminivirus coat protein/nuclear export factor BR1 family
It has been shown that the 104 N-terminal amino acids of the maize streak virus coat protein bind DNA non- specifically. This family also includes various geminivirus movement proteins that are nuclear export factors or shuttles. One member BR1 facilitates the export of both ds and ss DNA form the nucleus.
Statistics
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PSSM-Id: 307130
Aligned: 41 rows
Threshold Bit Score: 169.789
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q08595     2 RRGAYTPRstpfprdRRSYNAGKGRSFRSYRRRGPVRPLARRNlfgddhARAFTYKTlsedqfgPDFTIHnNNYKSSYIS 81  Indian cassava mosa...
CAL30139   5 KSKGKRKRd-----eGESSGRWKGAVYKRRKTQYKVVPVRPP-------ALCVLRQQwit-pdkQSVVVT-NTPRIDLIT 70 
Q89238     8 RGKGKRKLe-----eGESSGRWKGAVYKRRKQAYKVVPVKPP-------ALCVFRYNwln-sdrTNIVVG-NTPRVDLIT 73  Wheat dwarf virus
O39520     8 KKRKRSGG------------DSKAKSRGSSSYIPRSVSSRRE-------SLQVATFSwts--sgSGIKFS-PGGAAYLVS 65  Bean yellow dwarf v...
P31616    12 RKRGRYGKt-----yQALGVKSQRELEQLVNQPGRPVSNRRP-------ALQVAEYLwtt--nkTGMTFS-PGGSTFLIT 76  Tobacco yellow dwar...
P14985     9 RKRPSSSS-------------AQASKKRRVYRPAVSRSLARRE------PLQVQDFVw-----dTDVAFN-RGGGCYLLT 63  Chloris striate mos...
Q76QL8     6 RKRGDDSNw------NKRVSKKKPSSA-GLKRAGS--KADRP-------SLQIQTLQha---gtTMITVP-SGGVCDLIN 65  Maize streak virus ...
Q67566     7 RKRTDEGSg------SRRFTKKKSA---AKGRTSSS-RAIRP-------ALQIQSFVsa---gaATIAVP-TGGVCHLLS 65  Digitaria streak virus
Q89551     8 RKRSDETGr------RKRSSGVKQGRT-SAARAGSAVRRTRP-------SLQIQTLQaa---gtSMIEVP-SGGVCDLLG 69  Sugarcane streak vi...
Q84369     7 RKRSDEVAw------SRRKPVKKQDTGFPLPRAGPSVRRGLP-------ALQIQTLTaa---gdTMITVP-SGGICSLIG 69  Panicum streak viru...
Q08595    82 MPVKTRAlSDNRVGDYIKLVNISFTGTVCIKNSQMESDGSpmlglhGLFTCVLVRDKTPRIySATepliPFPqLFGS--- 158 Indian cassava mosa...
CAL30139  71 CFAAGKG-DDNRHTNQTIMYKFHLQGSVYVADASSKFVTP------LRLYHWLVYDAEPKQaMPG----IED-IFTMp-- 136
Q89238    74 CFAQGKA-DNNRHTNQTVLYKFNIQGTCYMSDASAPFIGP------VRLYHWLVYDAEPKQaMPD----ATD-IFTMp-- 139 Wheat dwarf virus
O39520    66 NFPQGAN-DNCRHTNKTVLYKFMAKNTIYLDSSHYMKVFR------APFHFWLVYDKSPGAnVPS----TGD-IFEGpsl 133 Bean yellow dwarf v...
P31616    77 NFPQGAN-ENCRHTNRTITYKMAVKTWVALDGSMFSRVSK------FPIYFWLVYDKNPGEsNPS----PSA-IFDSl-- 142 Tobacco yellow dwar...
P14985    64 SYARGSA-ENQRKTAETITYKVAVNLGCAISGTMQQYCIS------SRPVCWIVYDAAPTGsAVT----PKD-IFGYpeg 131 Chloris striate mos...
Q76QL8    66 TYARGSD-EGNRHTSETLTYKIAIDYHFVADAAACRYSNT------GTGVMWLVYDTTPGGqAPT----PQT-IFAYpdt 133 Maize streak virus ...
Q67566    66 SYSRGSG-EGDRHTNETVTYKAAFDYHFSANAGPCAYSSI------GVGVLWLVYDAQPSGqVPA----VTD-IFPHdtt 133 Digitaria streak virus
Q89551    70 SFSRGSD-EGNRHTNETVIYKVALDYHFIATAAACKYSSI------GTGVVWLVYDAQPSGnPPT----VKD-IFPHpdt 137 Sugarcane streak vi...
Q84369    70 TYARGSD-EGNRHTNETLTYKVALDYHFVATAAACKYSSI------GVGVMWLVYDAQPTGnSPE----VKD-IFPHsdt 137 Panicum streak viru...
Q08595   159 INASYADLSIQDPykdRFTVIRQVSYPVNTEKgdhm--------crfKGTRRFG-GRYPIWTSFKDDGgSGDSSGLYSNT 229 Indian cassava mosa...
CAL30139 137 WNVLPSTWTIWRAwahRFVVKRKWHVDLVSDGkkvgsstadtrynyvVGKNIVDcNKFIKGLRVSTEW-MNTGDGKIGDI 215
Q89238   140 WNLLPSTWTVQRAwshRFVVKRKWTVNLVTDGrkvgsktvdqrynwvVGKNIVDaSKFFKGLRVTTEW-MNTGDGKIGDI 218 Wheat dwarf virus
O39520   134 FPHNPWTWTVSRAachRFVVKKTWSCVVESNGidptkgqgatyygpgPCNQVKScNKFFKRLGVSTEW-KNSATGDVGDI 212 Bean yellow dwarf v...
P31616   143 YQDQPGTWTVTRNvchRFVVKKTWSCMLESNGvdpnakqgssyygpgPCYQWRHvTKFFKRLGVSTEW-KNSSTGDVADI 221 Tobacco yellow dwar...
P14985   132 LVNWPTTWKVARAvshRFIVKRRWVFTMESNGsrfdrdy--tnlpaaIPQSLPVlNKFAKQLGVRTEW-KNAEGGDFGDI 208 Chloris striate mos...
Q76QL8   134 LKAWPATWKVSRElchRFVVKRRWLFNMETDGrigsdip-psnaswkPCKRNIYfHKFTSGLGVRTQW-KNVTDGGVGAI 211 Maize streak virus ...
Q67566   134 LQSFPYTWKVGREvchRFVVKRRWCFTMETNGrigsdkp-psnavwpPCKRSIYfHKFATGLGVKTEW-KNTTDGGVGSI 211 Digitaria streak virus
Q89551   138 LTAFPYTWKVGREvchRFVVKRRWTFTMEVNGrigsdip-pstscwpPCRKNIYfHKFVTGLGVKTEW-KNTTGGEVGDI 215 Sugarcane streak vi...
Q84369   138 LSAFPYTWKVGREvchRFVVKRRWCFTMETNGrigsdvp-pantawpPCKKDIYfHKFCTGLGVKTEW-KNVTDGKVGAI 215 Panicum streak viru...
Q08595   230 YKNAILVYYVWLSDVSSQLEMY-----------CKYVTRYIG 260 Indian cassava mosaic virus
CAL30139 216 KKGALYLVTCTRAGVTGDSASTgfsvvcnlthaCYFKSIGLQ 257
Q89238   219 KKGALYLISSTRGGVTGDSASTafdvvcaythaCYFKAIGIQ 260 Wheat dwarf virus
O39520   213 KEGALYIVG----APSQKSDVYvng-----yfrVYFKSVGNQ 245 Bean yellow dwarf virus
P31616   222 KEGALYLVC----APGGGATVRvgg-----rfrMYFKSVGNQ 254 Tobacco yellow dwarf virus (strain Australia)
P14985   209 KSGALYLVM----APANGAVFVarg-----nvrVYFKSVGNQ 241 Chloris striate mosaic virus
Q76QL8   212 QRGALYMVI----APGNGLTFTahg-----qtrLYFKSVGNQ 244 Maize streak virus - [Reunion2]
Q67566   212 KKGALYFVI----APGSGIDFTlfg-----tcrMYFKSVGNQ 244 Digitaria streak virus
Q89551   216 KKGALYIVI----APGNGLDFTvhg-----narLYFKSVGNQ 248 Sugarcane streak virus - [Natal]
Q84369   216 KKGALYIVI----APGNGLEFTvhg-----qcrLYFKSVGNQ 248 Panicum streak virus - Karino
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