6B0X


Conserved Protein Domain Family
Phage_capsid

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pfam05065: Phage_capsid 
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Phage capsid family
Family of bacteriophage hypothetical proteins and capsid proteins.
Statistics
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PSSM-Id: 428287
Aligned: 66 rows
Threshold Bit Score: 94.7553
Created: 22-Mar-2022
Updated: 13-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6B0X_A                   41 NEF-TTPI-LQEVMENSKIMQLGKYEP--MEGTEK-KF-TFWa-dKP-------GAYWVG---EGQKI-ETSKa-TWVNA 101
Q9CFS0                  130 QDI-RTMI-NTLVRQYDSLQQYVRVESvsTS-NGSrVY-EKWtdvTP-------LTVMDA---EDGKIpDLDNp-QLTII 194 Lact...
jgi:Mvan_4361           116 MQLdPTII-LTANGSFNQVRQISRVVQ---ATGKSwTGvTSAg----------vSGSWDGeavEv----SDDSp-ELQQP 176
P71947                  202 AAL-DPAIlLSGDGSTNPIRQVARVVQ--TT-SEVwRGvTSEg---A-------EAHWYS---EAQEv-SDDSp-TLAQP 262 Myco...
jgi:Cthe_1719           133 NEF-INDL-FESMMAQSQVANRIRMIPigANTNRLrALgIDEnsrANgsrwggvQAYWVA---E-AEt-AAQSkpKFREI 205
CAL77406                146 TEW-REQI-WSLVFADNDLLGFCNPEP---TQGNTvGI-VKDe-tTPwga-agvQAAWRS---E-GTq-MIASkaALTPE 212
jgi:Bphy_7144           143 PQF-ASEI-FTLSLEEQALLPMTDSTP---ISGNSmVFpKDEttpwg---tdgiRAYWQA---E-ASv-ATATkpKLGVS 209
Q2FX56                   41 NDF-TTPI-LQEVMENSKIMQLGKYEPmeGT-EKKfTF-WADk----------pGAYWVG---EGQKi-ETSKa-TWVNA 101 Stap...
WP_000854835            108 KHS-ATDI-RPTFNEVSTLIDRVSSKTlkGGESYQqPY-IKSy----------gEGDYTT---EGNDYnTSET--TFGYA 169 Baci...
PRJNA309927:AW166_02555 126 QTV-LDKI-IEKIEAVGMILPLITRTA--IKGGVTvPT-SAVk----------pVATWVA---E-SSg-SDKQkkTTGSI 185
6B0X_A                  102 TMRAFKLGVILPVTKEF--LNYTYSQFFEEMKPMIAEAFYKKFDEAGILN--QGnnpfg---ksiaQSIEKTNKVIKgdf 174
Q9CFS0                  195 KYLIKRYAGIITATNTL--LKDTAENILAWLSSWIAKKVVVTRNQAII--------------------EVMKAAPKKpti 252 Lact...
jgi:Mvan_4361           177 EIPVHKLQIWVEFSHEL--QHDAAG-LADDIAKMIAFEKDVKESIAFATG--SGvgqpr---gvitaLMGSDSVVNSav- 247
P71947                  263 AVPSYRGSCWIPFSLEI--EGDAAG-FVAEVGRVLADSVEQLQAAAFVSGsgNGeptg-----fvsaLTGTADYTVTgag 334 Myco...
jgi:Cthe_1719           206 EMSLQKLLALCYVTDDL--LQDTTA-LEAIVRQAYADEMSFKIDDAIING--TGvgmp-------lgilNSDALVTVpke 273
CAL77406                213 ILQLHELYAFVLATNEV--LDDAPR-LQNRITVQAARAIRWKLFEAVCFG--DGngkp-------lgfmASPALVTApae 280
jgi:Bphy_7144           210 TNRLHKLMALVPVTDEL--LDDASA-LASYLPGKTAASIRWKTDESILFG--TGagqp-------wgvmKSGALIVVakd 277
Q2FX56                  102 TMRAFKLGVILPVTKEF--LNYTYSQFFEEMKPMIAEAFYKKFDEAGILN--QGnnpf-------gksIA-QSIEKTnkv 169 Stap...
WP_000854835            170 DITKAKVTAYSEDTEEL--QKLPAADYDAEVMKGITVATRKKLTREILIG--TGatnrl----vgifsAAATAIDSEtdl 241 Baci...
PRJNA309927:AW166_02555 186 TFNYHKLRCAVAVSLEVetMSLAVFE--TTLINNIVEAMTKAIEQAIVSG--DGsgkpkgilaetpFE------GQAld- 254
6B0X_A                  175 --------tqDNII----DLEA-LLEDDELE-ANa---FISKTQNRSLLRKIV---DpETKERIYd--------rNSd-- 224
Q9CFS0                  253 -------akfDDVI----TMINtAVDPAIIA-TSs---LLTNQSGLNKLALVK---T-AEGKYLLepdp---tkpNSy-- 308 Lact...
jgi:Mvan_4361           248 ---------tDTFAagdvHNLDgDLPQRYAFnAS----WLAHRKIYSKIRQF----DtNGGASLWgqla---egrKS--- 304
P71947                  335 te----avvaADVY----ALQS-ALPPRFQS-NSa---FAANLSTINVLRQAE---T-ANGALKFpsl----hasPP--- 390 Myco...
jgi:Cthe_1719           274 kdqgagtikyENIL-----KMWsSMPARLRAnAV----WYINQEIEPQLYTMAlniG-AGGAPVFmpsggaaasqYS--- 340
CAL77406                281 ggqsagtivtANIL---------KMMARLFEmPGgnpiWLANRDTIPQLGTMT-----IGNNAAFlpvn---qalTGspf 343
jgi:Bphy_7144           278 sgqatntltpTNIS---------NMISRLPVgSFgrsfWLINPDVLPALDNLT-----LGNYPIYmpvgggdraaGGsp- 342
Q2FX56                  170 ik---gdftqDNII----DLEAlLEDDELEA-NA----FISKTQNRSLLRKIV---DpETKERIYdr-------nSD--- 224 Stap...
WP_000854835            242 eisaidastlDEII----YSYG--GDEDVED-AAv---LILNKLDLKSFAKLR---T-SDGKKVYnvvs---qgnSG--- 301 Baci...
PRJNA309927:AW166_02555 255 ---------vAKINyktlTDAEaALPLEYEAsAI----WTMTKKTFMEFSAMT---D-ADGQPIArtnygisgkpER--- 314
6B0X_A                  225 --SLDGLPVVNLK----------SSNLK--RGELITGDF-DKLIYGI-PQL-IEYKIDEtaqlstvknedgTp------- 280
Q9CFS0                  309 --LIKGKQVIVVAdrwl--pntgSTVYP-----LYYGDMsQAITLFD-REN-MSLLPTN------------Ig------- 358 Lact...
jgi:Mvan_4361           305 --ELLGRPDYVAEamd----ssiTNGQD--NHVLAFGDF-QNFVIAD-RLG-TTLSYIP------------Nlm------ 355
P71947                  391 --MLAGKHIWEVSnmdtvdaavtATNY-----PLVLGDW-KQFIITD-RVG-STVELVP------------Hvf------ 442 Myco...
jgi:Cthe_1719           341 --TLLNRPIIPIEqc--------sPLGK--KGDIILADP-TQYIGID-KKG-LTSDVSI------------H-------- 385
CAL77406                344 knTLAGDPLLFNEhc--------qTVGT--TGDIVLADL-SGYALATkQGGgIDFAASI------------H-------- 392
jgi:Bphy_7144           343 ygMLKGRPIVLSEha--------sPFSS--QSDISLLDL-SYYRSIT-SRGgIQTATSM------------H-------- 390
Q2FX56                  225 --SLDGLPVVNLKs----------sNLK--RGELITGDF-DKLIYGI-PQL-IEYKIDE------------Taqlstvkn 275 Stap...
WP_000854835            302 --TIDGVPFIINSackavsdaktTAGQ----YSMAYGPL-SNYQLTI-FSD-MDVQRST------------D-------- 352 Baci...
PRJNA309927:AW166_02555 315 --ILLGRPVVLCNyv------dsFATATegTAFAFLFNY-KDYILNT-NYQ-MGVKKYE------------D-------- 363
6B0X_A                  281 -----vNLFEQDMVALRATMHVALHIADdKAFAKLV 311
Q9CFS0                  359 -----aGAFETDTTKIRVIDRFDVKATDsEALVAGS 389 Lactococcus lactis subsp. lactis
jgi:Mvan_4361           356 ----gpNGRPVGKAGWHAWIRVGSDVVNpGAFRLLN 387
P71947                  443 ----ggNRRPTGQRGFFCWFRVGSDVLVdNAFRVLK 474 Mycobacterium tuberculosis
jgi:Cthe_1719           386 ------VRFLYDEQVFRFIYKFNGMPYKnKPIMPYK 415
CAL77406                393 ------LFFDQNLTAFRWIIRAGGQPYLsKPVQPAK 422
jgi:Bphy_7144           391 ------VYFDADATAFRTTFRVDGGPKIeNAITPPK 420
Q2FX56                  276 edgtpvNLFEQDMVALRATMHVALHIADdKAFAKLV 311 Staphylococcus aureus subsp. aureus NCTC 8325
WP_000854835            353 ------FKFKQGMIAHRGSVFAGGNVISkNGFLRVk 382 Bacillus anthracis
PRJNA309927:AW166_02555 364 --------NETDDQVTKAIMIVDGKVVDkNSLVVLK 391
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