Conserved Protein Domain Family
serpinB12_yukopin

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cd19571: serpinB12_yukopin 
serpin family B member 12, yukopin
Yukopin, encoded by the SERPINB12 gene, is a member of the serpin superfamily of serine protease inhibitors. It inhibits trypsin and plasmin, but not thrombin, coagulation factor Xa, or urokinase-type plasminogen activator. An important paralog of this gene is SERPINB4. The ovalbumin family of serpins (ov-serpins) is a family of closely related proteins, whose members can be secreted (ovalbumin), cytosolic (leukocyte elastase inhibitor, LEI), or targeted to both compartments (plasminogen activator inhibitor 2, PAI-2). It also characterized by N- and C-terminal extensions, the absence of a signal peptide, and a Ser rather than an Asn residue at the penultimate position. The ov-serpins corresponds to clade B of the serpin superfamily. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants can cause blood clotting disorders, emphysema, cirrhosis, and dementia. A classification based on evolutionary relatedness has resulted in the assignment of serpins to 16 clades designated A-P along with some orphans.
Statistics
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PSSM-Id: 381037
Aligned: 9 rows
Threshold Bit Score: 729.357
Created: 8-Nov-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
reactive center
Feature 1:reactive center loop (RCL)
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
Q9D7P9         1 MDSLTAANNKFCFDFFREISKDDAHKNIFVCPLSLSAAFGMVRLGARGDSAHQIDEALH--------------------- 59  house mouse
XP_023442995   1 MDSLVAANTKFCFDLFQEISKGDRGKNLFVCPLSISAAFGMVRLGARSESAHQIDKWGPpdgglastgsvlntaagrpsq 80  nine-banded arm...
Q96P63         1 MDSLVTANTKFCFDLFQEIGKDDRHKNIFFSPLSLSAALGMVRLGARSDSAHQIDEVLH--------------------- 59  human
ACQ62981       1 MDSLVAANTKFCFDLFQEISKGDRGKNLFVCPLSISAAFGMVRLGARSESAHQIDKVLH--------------------- 59  nine-banded arm...
XP_005081507   1 MDSLIAANSKFSFDFFQEISKDDIHKNIFVCPLSISAAFGMVRLGARGDSAHQIDEVLH--------------------- 59  golden hamster
XP_006837600   1 MDSLVAANSKFCFDLFKEISKDGSLRNIFLCPLSLSAALGMVHLGARSDSACQINKVLH--------------------- 59  Cape golden mole
XP_012396685   1 MDSLVTANTNFCLDLFQELNKGDEPANIFVCPLSISVAFGMISLGAKGCTADQINEVLH--------------------- 59  Tasmanian devil
XP_012976969   1 MDSLIAANSKFSFDFFQEISKDDIHKNIFVCPLSISAAFGMVRLGARGDSAHQIDEVLH--------------------- 59  golden hamster
XP_015446285   1 MDSLIAANTKFCLDLFQEISKNDGHKNIFFCPLSLSAALGMVRLGARSDSAHQIDQVLH--------------------- 59  black flying fox
Feature 1                                                                                        
Q9D7P9        60 ------------------------------FNELSKDEHKEPndpspqseskasdssleg--qkqtsasqdqqgestndH 107 house mouse
XP_023442995  81 tvvrshpssernpsgtahftrvearvlvlhFNEFSQNESKEPdpclkrdpqevvagspfegqeratgspdlqensskdeS 160 nine-banded arm...
Q96P63        60 ------------------------------FNEFSQNESKEPdpclksnkq--------------------kagslnneS 89  human
ACQ62981      60 ------------------------------FNEFSQNESKEPdpclkrdpqevvagspfe-gqeratgspdlqnsskdeS 108 nine-banded arm...
XP_005081507  60 ------------------------------FNELSKSGSEEPcsksksevlsdsspegq----kqtpaaqeqqddstdeN 105 golden hamster
XP_006837600  60 ------------------------------FNEVSQNEKKEPgprwksnksgvvadspvkgqgrkegppdlqagemnssN 109 Cape golden mole
XP_012396685  60 ------------------------------FNEVSQNKSTEPetsskgksq--------------------eatslsngY 89  Tasmanian devil
XP_012976969  60 ------------------------------FNELSKSGSEEPcskskse------------------------ddstdeN 85  golden hamster
XP_015446285  60 ------------------------------FNELSRDQSEKPdpclknkqq--------------------eegsskdkS 89  black flying fox
Feature 1                                                                                        
Q9D7P9       108 QLLGCHFGKLLSRIDRDKSYYTLSMANRLYGEQEFPICSEYSDDVTEFFHTTVESVDFQKDSEKSRQEINFWVESQSQGK 187 house mouse
XP_023442995 161 SVLSCYFGQLLSKLGRVRADLTLSIANRLYGEQEFPICPEYLDRVIQFYHTTIESIDFRKDAEKSRQEINFWVESQSQGK 240 nine-banded arm...
Q96P63        90 GLVSCYFGQLLSKLDRIKTDYTLSIANRLYGEQEFPICQEYLDGVIQFYHTTIESVDFQKNPEKSRQEINFWVECQSQGK 169 human
ACQ62981     109 SVLSCYFGQLLSKLGRVRADLTLSIANRLYGEQEFPICPEYLDRVIQFYHTTIESIDFRKDAEKSRQEINFWVESQSQGK 188 nine-banded arm...
XP_005081507 106 ELLGCYFGKLLSRLDTAKAYYTLSMANRLYGEQGFPICPEYSDGVTQFYHTTIESVDFRGDTEKSRQEINFWVESQCQGK 185 golden hamster
XP_006837600 110 DALNCCFGKLLSKLYRTRADYTLSIANRLYGEQGFLICPEYLDGVVQFYHTTMESLDFRKDIEKSRQEINFWVESQSQGR 189 Cape golden mole
XP_012396685  90 KDSDSYFGNLLKKLDRIKCDYTLSIANRLYGEQEFPICPAYSDNVMEFYHTTIESVDFRKDTEKSRQQINFWVECQTQGK 169 Tasmanian devil
XP_012976969  86 ELLGCYFGKLLSRLDTAKAYYTLSMANRLYGEQGFPICPEYSDGVTQFYHTTIESVDFRGDTEKSRQEINFWVESQCQGK 165 golden hamster
XP_015446285  90 ELLSCYFGQLLSKLDRIKADYTMSIANRLYGEQEFPICPEYIDDVVRFYHTTIESVDFQKDTEKSRQEINFWVESQSQGK 169 black flying fox
Feature 1                                                                                        
Q9D7P9       188 IKELFGKEAIDNSTVLVLVNAVYFKAKWEREFNSENTVDASFCLNENEKKTVKMMNQKGKFRIGFIDELQAQILEMKYAM 267 house mouse
XP_023442995 241 IKELFSKDSISDATVLVLVNTAYFKAKWEKYFDCEKTVDEPFVLNENEKKTVKMMHQTGLFRIGFIEEVKAQILEMRYKK 320 nine-banded arm...
Q96P63       170 IKELFSKDAINAETVLVLVNAVYFKAKWETYFDHENTVDAPFCLNANENKSVKMMTQKGLYRIGFIEEVKAQILEMRYTK 249 human
ACQ62981     189 IKELFSKDSISDATVLVLVNTAYFKAKWEKYFDCEKTVDEPFVLNENEKKTVKMMHQTGLFRIGFIEEVKAQILEMRYKK 268 nine-banded arm...
XP_005081507 186 IKELFSKEAITNATVLVLVNAVYFKAKWEKSFDSENTVDAPFCLSENEKKTVKMMNQKGKFRIGFIEELQAQILEMKYTM 265 golden hamster
XP_006837600 190 IKEFFSKDTINNTTVLVLVNAVYFKAKWENVFDYKNTVDASFTLNENEKKSVKMMNQTGLFRIGFIEDLQAQILEMRYTK 269 Cape golden mole
XP_012396685 170 IKDLFDKDNITDSTVLVLVNAVYYKAKWEKSFDHEKTEDSPFWLNKNEQKSVKMMRQQNTFKIGYIEELKTQILEMKYIK 249 Tasmanian devil
XP_012976969 166 IKELFSKEAITNATVLVLVNAVYFKAKWEKSFDSENTVDAPFCLSENEKKTVKMMNQKGKFRIGFIEELQAQILEMKYTM 245 golden hamster
XP_015446285 170 IKELFSKDAIDSGTVLVLVNAVYFKAKWEKYFEHENTVDAPFSLNENEKKTVKMMNQEGLFRIGFIGELKAQILEMPYTR 249 black flying fox
Feature 1                                                                                        
Q9D7P9       268 GKLSMLVLLPSCSednvNSLQELEKKINHEKLLAWSSSENLSEKPVAISFPQFNLEDSYDLKSILQDMGIKDVFDETKaD 347 house mouse
XP_023442995 321 GKLSMFVLLPSCSsdnlKGLEELEKKITHEKILAWTSSENMPEKTVAVSFPQFSLEDSYDLSSLIKDMGVTDIFDETKaD 400 nine-banded arm...
Q96P63       250 GKLSMFVLLPSHSkdnlKGLEELERKITYEKMVAWSSSENMSEESVVLSFPRFTLEDSYDLNSILQDMGITDIFDETRaD 329 human
ACQ62981     269 GKLSMFVLLPSCSsdnlKGLEELEKKITHEKILAWTSSENMPEKTVAVSFPQFSLEDSYDLSSLIKDMGVTDIFDETKaD 348 nine-banded arm...
XP_005081507 266 GKLSMLVLLPSCSddnvKSLQELESKISHEKIMAWSSSENMPEESVSISFPQFVMEDSYDLNSILQGMGIKDIFDETKaD 345 golden hamster
XP_006837600 270 GKISMFVLLPRSSsdnlKGLEELESKMTYEKMVECTNPETISEETVAVSFPQFTLEDSYDLNAILQAMGIVDIFDEAKtD 349 Cape golden mole
XP_012396685 250 GKLSMFVLLPEDF----TGMEELEKNMTHEKITEWTSPTIMYDEMVDISFPQFTMESNLDLSAILQKMGITDVFEEAKcD 325 Tasmanian devil
XP_012976969 246 GKLSMLVLLPSCSddnvKSLQELESKISHEKIMAWSSSENMPEESVSISFPQFVMEDSYDLNSILQGMGIKDIFDETKaD 325 golden hamster
XP_015446285 250 GKLSMFVLLPSCSadnlKGLEELERNITYEKIMAWSSSENMSEERVAISFPKFTLEDSYNLNPILQDMGIIDIFDEKA-D 328 black flying fox
Feature 1                               ################  #############                      
Q9D7P9       348 LTGISKSPNLYLSKIVHKTFVEVDEMGTQAAAASGVVAAekALPSWVEFNANHPFLFFIRHNPTQSLLFCGRVYCP 423 house mouse
XP_023442995 401 LTGISLSPNLYLCKVVHRTCVEVDEDGTQASAASGAVGQe-KSRPPCTFNANHPFIFFIKHATTKTILFYGRFCSP 475 nine-banded armadillo
Q96P63       330 LTGISPSPNLYLSKIIHKTFVEVDENGTQAAAATGAVVSerSLRSWVEFNANHPFLFFIRHNKTQTILFYGRVCSP 405 human
ACQ62981     349 LTGISLSPNLYLCKVVHRTCVEVDEDGTQASAASGAVGQe-KSRPPCTFNANHPFIFFIKHATTKTILFYGRFCSP 423 nine-banded armadillo
XP_005081507 346 LTGISKSPRLHLSKIIHKSFVEVDEMGTEAAAASGAVAA--EKALPLEFNADHPFLFFIRHNPTHTILFCGRVYSP 419 golden hamster
XP_006837600 350 LTGISSSPSLYLSKFVHKTCLEVDEDGTQAVAASGAVGV--TRTSYVTFNADHPFLFFIRHNKTQTLLFYGRVCSP 423 Cape golden mole
XP_012396685 326 LTGMSSSPNLYLSKAVHKTFLEVNEDGTQAAAATGTVVAtrSVSPYVTFNANHPFLFFIRENKTNTILFYGKVYSP 401 Tasmanian devil
XP_012976969 326 LTGISKSPRLHLSKIIHKSFVEVDEMGTEAAAASGAVAA--EKALPLEFNADHPFLFFIRHNPTHTILFCGRVYSP 399 golden hamster
XP_015446285 329 LTGISPNPNLYLSKVVHKTYVEVDENGTQAAGASGAVGTtlSAPSWVTFNVDHPFLFFIRHNKTQTILFYGRVCSP 404 black flying fox

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