1PDN,6PAX


Conserved Protein Domain Family
PAX

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cd00131: PAX 
Click on image for an interactive view with Cn3D
Paired Box domain
Statistics
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PSSM-Id: 238076
Aligned: 8 rows
Threshold Bit Score: 222.294
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 34 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:bipartite paired DNA-binding domain.
  • Structure:6PAX

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          ##    # ### #    #           # #        #  # ##   #        ####### ## ##   
1PDN_C      1 GQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR-IATPE 79  fruit fly
6PAX_A      1 XHSGVNQLGGVFVNGRPLPDSTRQRIVELAHSGARPCDISRILQVSNGCVSKILGRYYATGSIRPRAIGGSKPR-VATPE 79  human
P09084      4 TYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPR-VTTPN 82  house mouse
4107113     8 GQGGVNQLGGLFVNGRPLPESIRRKIVELSQNGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPK-VATSK 86  Ephydatia fluviatilis
4185914    20 GHSGINQLGGIFVNGRPLPDVTRQRIIELSQSGARPCDISRILQVSNGCVSKILCRYYETGSIKPKAIGGSKPR-VATNT 98  Girardia tigrina
AAF64461    8 GQGKVNQLGGVFINGRPLPKLLRWKIIELAQMGVRPCDISRQLRVSHGCVSKILCRYQETGTVDPGIVGLNRPR-DVTPE 86  Acropora millepora
P23758      5 GQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVSKILTRFYETGSIRPGSIGGSKTKqVATPT 84  fruit fly
NP_496189  13 GQGRVNQLGGVFINGRPLPIHVRHAIISMAKKGIKPCHISRQLKVSHGAVSKILNRYAETGSISPGQIGGSPRArLTVQA 92  Caenorhabditis ele...
Feature 1                    ###                  # ##  #  #   
1PDN_C     80 IENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGRD 128 fruit fly
6PAX_A     80 VVSKIAQYKQECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLA 128 human
P09084     83 VVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKI 131 house mouse
4107113    87 VVLKIEDYKQENPSIFAWEIRDRLLQDGVCDKVNVPSVSSINRIVRTRA 135 Ephydatia fluviatilis
4185914    99 VVRKVTIYKQESPSMFAWEIRDRPLQDGVCNQDNLPSISSINRILRSLA 147 Girardia tigrina
AAF64461   87 IENKIDQFRKENSGIFSWEVRDRLLRENICSKSTVPSLGAISQILKSKI 135 Acropora millepora
P23758     85 VVKKIIRLKEENSGMFAWEIREQLQQQRVCDPSSVPSISSINRILRNSG 133 fruit fly
NP_496189  93 VEKEILIACDENPQMSAAELRDWLIHKDICTKGNAPTVPAIKRLIGNKG 141 Caenorhabditis elegans

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