1XJT,1XJU


Conserved Protein Domain Family
lyz_P1

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cd16901: lyz_P1 
Click on image for an interactive view with Cn3D
P1 lysozyme Lyz-like proteins
Enterobacteria phage P1 lysozyme Lyz is secreted to the Escherichia coli periplasm where it is membrane bound and inactive. Activation involves the release from the membrane, an intramolecular thiol-disulfide isomerization and extensive structural rearrangement of the N-terminal region. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
Statistics
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PSSM-Id: 381620
Aligned: 41 rows
Threshold Bit Score: 155.843
Created: 24-Aug-2016
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: catalytic residues [active site], 3 residue positions
Conserved feature residue pattern:E C TClick to see conserved feature residue pattern help
Evidence:
  • Comment:cysteine substitutes for the canonical aspartic acid residue found in related T4 lysozyme like proteins

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     # #               #                                                
1XJT_A        29 RTNQAGLELIGNAEGCRrDPYXCPAG---VWTDGIGNTHgv------tpGVRKTDq---QIAADWEKNILIAERCINQhf 96  Enterobacteria ...
ACO74546      11 TLSASALVGIALHEGYRdTAYIPVPGd--VPTIGFGTTEgv------kmGDRITPp---KALARALTDVQKFEGALKQcv 79  Laribacter hong...
ENO80318       9 TASALLVGSLAGYEGYReHAYRDSVG---VPTIGFGTTVgv------rmGQRTDPv---RAVQRLAADADAYAREVGAci 76  Thauera sp. 63
WP_019561725  12 VVAALTLASIAGYEGYRrTAYDDGVG---VQTVGFGSTRhpdgr-pvkpGDAVTPe---RAVLMLAHDADRIWREAAAci 84  Caldimonas mang...
ABM37547      13 SLSAAAFVGILQREDYReQAYPDPTYgwkVPTAGFGTTEgi------kqGDSLKVv---PAIQRALSDASKFEGALKRcv 83  Polaromonas nap...
KEH10295      13 VLSASGLVYLAQREGYSdVAYPDPVHgakVPTVGFGTTVgv------kaGDKTTPv---RALIRLRADAAEKEVALRRcf 83  Delftia tsuruha...
ABB74748      17 VVAASTLVGIAVNEGYKdEAYIPLRGd--VPTIGFGTTMgv------kmGDRTTPerslIRLLDEIEGVYAAGVRRCVt- 87  Nitrosospira mu...
BAN87829      16 AASAAFFVGVKNDEGFTsKPVIPVKGd--RPTQGYGSTFkpdgspvkmtDPPITRa---TADKWLRNDVAKREVVFKDsl 90  Acinetobacter b...
WP_024437324  14 VISLAGVAWTQNREGTVlKPYLDSGK---VATIGTGTTVypngqkvkisDPAITKk---QAAEYLKFHMNKDAKIFNKsl 87  Acinetobacter b...
KEC82343      13 AASAAFFTSLIKYEGYEpKPYLDSAK---VATIGIGSTSyengtkvkmtDKPISKe---RAVQIAKAHIAKDEVAFRKsl 86  Acinetobacter s...
Feature 1                                                                                        
1XJT_A        97 rgKDXPDNAFSAXTSAAFNXGCNSLrtyyskargxrveTSIHKWAQKGEWVNXCn------------HLPDFVNSNGv-- 162 Enterobacteria ...
ACO74546      80 -rVPLHQHEYDAFVSLAYNIGSGAFc-----------gSTLVRKLNAGDYAGACa------------EIDRWTYAGGk-- 133 Laribacter hong...
ENO80318      77 geVPLAQHEFDAYVSLAYNVGTGAFc-----------gSTLVRKLRQTPPDYAGac----------aQILRWTYAGGk-- 133 Thauera sp. 63
WP_019561725  85 adVPLTDGEAAAYQSLVYNIGAGAFc-----------rSTLVKKLKAAAAPHLTpeerearyagacrEILRWNRAGGq-- 151 Caldimonas mang...
ABM37547      84 -sVPLHQAEYDLYVNLSYNIGSTGFc-----------gSTIVRRLNSLDYAGACd------------AILMWNKSNGqdc 139 Polaromonas nap...
KEH10295      84 gdVRLYPREWDAFVGLAHNAGATSVcmnne----rtgpSTIVRRLQASDHKGACe------------AILLYDRAGPvsk 147 Delftia tsuruha...
ABB74748      88 --VPLYQHEYEAYVSLAYNIGVAAFcrkal----pgrpPNLIDLLNAGRYAEACa------------RIEAFKYGPGkk- 148 Nitrosospira mu...
BAN87829      91 kgVKLSQTEYDIYLDFSYQYGVPTFa-----------kSSMLKHLKAGQYKAACd------------SLLKYKYVAKrdc 147 Acinetobacter b...
WP_024437324  88 lgVPLSQNEYDLYMDFTYQFGTGAWs-----------qSSMLRNLKARNYVQACk------------SLLKWKYVAKkdc 144 Acinetobacter b...
KEC82343      87 qgVKLTQTEYDVYLDFVYNYGQANWn-----------gSSMLRNLKAGQYKQACt------------SLLKYKYVAKrdc 143 Acinetobacter s...
Feature 1                                    
1XJT_A       163 -----------pLRGLKIRREKERQLCL 179 Enterobacteria phage P1
ACO74546     134 -----------rLPGLVKRRAEERARCE 150 Laribacter hongkongensis HLHK9
ENO80318     134 -----------iEPGLVTRRKAEYRQCM 150 Thauera sp. 63
WP_019561725 152 -----------vLPGLSKRREAEYRQCM 168 Caldimonas manganoxidans
ABM37547     140 sa-----pgnrsCSGLWKDRLKTHAACM 162 Polaromonas naphthalenivorans CJ2
KEH10295     148 pqdrcshpdnrtCRGVWTDRQRLRAMCL 175 Delftia tsuruhatensis
ABB74748     149 -----------vLPGLVKRRAKERALCE 165 Nitrosospira multiformis ATCC 25196
BAN87829     148 si------rkngCYGVWTRQLERHAKCI 169 Acinetobacter baumannii NCGM 237
WP_024437324 145 si------rkngCYGVWTRQQARYEKCM 166 Acinetobacter baumannii
KEC82343     144 sv------rsngCYGVWTRQLDRYNKCI 165 Acinetobacter sp. ETR1

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