4B6H,5JP4


Conserved Protein Domain Family
PNRC

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pfam15365: PNRC 
Proline-rich nuclear receptor coactivator motif
The PNRC family, proline-rich nuclear receptor coactivator, is found in eukaryotes. Studies in S. pombe show that the proteins carrying this motif are mRNA decapping proteins. In addition, this motif is found in Saccharomyces cerevisiae two intrinsically disordered decapping enhancers Edc1 and Edc2, which show limited sequence conservation with human PNRC2. This motif in the N-terminal domain serves two purposes: it enhances the activity of the catalytic domain by recognizing part of the mRNA cap structure (i.e. activation motif), and secondly, it directly interacts with the decapping activator Dcp1. Mutation in the (YAG) sequence led to los of activity of activate the decapping complex. Hence the activity of the family members involved in mRNA processing mechanisms depends on YAG activation motif that is 11-13 residues N-terminal of a conserved LPxP Dcp1 interaction motif.
Statistics
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PSSM-Id: 464675
Aligned: 99 rows
Threshold Bit Score: 23.1011
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4B6H_C       107 YAGAKF--SEPPSPSVLPKPP 125
7_pfamImport   1 FAGTSF--VSPPEPCMLPMPN 19 
9_pfamImport   1 YAGAKF--AQSPSPSVIPMPP 19 
EDK42926     177 YAGSSF--HSSPAALALPKPK 195
EGV61110      90 FAGSSF--HSSPEALNLPKPT 108
P53080       153 YAGSTFatNGPREAKNLPKPS 173 Saccharomyces cerevisiae S288C
XP_003668883 140 FAGSTFanNIPLE-SSLPKPS 159
Q6FQE3       332 FAGASFatDVPNE-SNLPKPS 351 [Candida] glabrata CBS 138
EER34549     194 YAGSSF--HSSPDAFNLPKPS 212
CAY72188     149 YAGSSF--HQSPSAVSLPKPS 167
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