3MPB


Conserved Protein Domain Family
Lyx_isomer

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pfam07385: Lyx_isomer (this model, PSSM-Id:399985 is obsolete and has been replaced by 429437)
D-lyxose isomerase
Members of this family of sugar isomerases belong to the cupin superfamily. The enzyme from Cohnella laevoribosii has been shown to be specific for D-lyxose, L-ribose, and D-mannose. E. coli sugar isomerase (EcSI) has been structurally and functionally characterized and shows a preference for D-lyxose and D-mannose.
Statistics
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PSSM-Id: 399985
Aligned: 42 rows
Threshold Bit Score: 351.845
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3MPB_A         20 MKRSAINDILGHTRQFFSQHDVHLPPFASFSPAQWQQlD--TAAWEEVFDLKLGWDVTAFGRNNFAAHGLTLFTLRNGSA 97 
jgi:HSM_0820    1 MKRSEINQAIREAQQMMAKYHFVLPKFADFSLADWHTlS--LERYAEILEANLGWDVTDFNLGNFKQAGLTLFTLRNQSD 78  Histophilus so...
Q9CL68          1 MKRSEINQVLGEFKALMQRHCFYLPEFADYRLADWKLaD--LVSQQEVLDARLGWDVTDFNLNDFAKYGLTLFTIRNQSS 78  Pasteurella mu...
WP_015871090    1 MKRSFINQKIDEAHAFARRFHLALPEFAHFTLDDWKQ-Kd-FAHWQEVIDLQLGWDLTDFGGGNFAAMGLGLFTLRNGSL 78  Edwardsiella i...
jgi:Tola_0050   1 MRRSQLNEILADSQALFAQHQIYLPPFAHFTPQDWTTqD--LTRFQEVFDLQLGWDVTDMGSNDFANTGLTLFTLRNGSV 78  Tolumonas auen...
CCY39200        1 MKRSEVNRYIKQAIKLFDENNFHLPSWALLTPEEWKD-KiaTERCKEIIDHTLGWDVTDFGKNNFMKEGLTLFTLRNGSP 79  Tannerella sp....
CCZ06448        1 MKRSEINRYIREAILFFESNHFYLPVWARWSTAEWQS-K--GEECDEIRQNNLGWDITDFGKGRFAEEGLTLVTIRNGNF 77  Odoribacter sp...
CDE03376        1 MKRSEINQYIREAKAFMTKYHFMLPPWADWTPDDWKT-K--GPECDDIRERAMGWDLTDFGWGDFLKIGLTLVTLRNGSL 77  Bacteroides un...
WP_013255525    1 MKRSEINAIIEGAQAFFSEQGFHLPEWAFWNPEQWAA-H--KNGCKEIFDCKLGWDITDFGSGRFETRGLTLFTLRNGLE 77  Sediminispiroc...
vbi:Arad_8189   1 MKRSEINAALRQASETLERWHWSLPDWGYWTTADFAA-N--PQAASYLRAHQLGWDVTDFGSGRFAECGLVLFCLRNGIV 77  Agrobacterium ...
3MPB_A         98 KGmpyVKCYAEKIMHVRDAQVTPMHFHWRKREDIINRGGGNLIVELWNAD-SNEQT--ADSDITVVIDGCRQKHTAGSQL 174
jgi:HSM_0820   79 RN---NKPYAEKIMLVKQNQITPMHYHWKKMEDIINRGGGILVIQLYRRD-EITELldKVSSIDIQIDGEQYQVAAGSKI 154 Histophilus so...
Q9CL68         79 TN---QKPYAEKIMMVKEGQVTPMHYHWKKMEDIINRGGGTLVIRLYRRD-EQTDLldEKSTIQVAVDGKQVTVNAGGLV 154 Pasteurella mu...
WP_015871090   79 TDrryPKSYAEKMLLVDVQQETPFHFHFSKREDILNRGGGNLCMQIYHAT-HDEQLd-TQRPVEIAVDGCLHILAPGEKL 156 Edwardsiella i...
jgi:Tola_0050  79 GGkpyPKPYAEKIMISREGQQTPLHFHWYKMEDIIHRGGGNMIIELYNRT-ADEQC--DTTDVEVVLDGERQRHKAGSRL 155 Tolumonas auen...
CCY39200       80 Ks---EKTYCEKIMVSYVNQITPMHFHWNKMEDIINRGGGILALQLWKANkKEEK---TSDSFTVQIDGITQNIEAGEII 153 Tannerella sp....
CCZ06448       78 KYd--NKPYCEKIMLVREKQITPIHFHWKKMEDIINRGGGKLCIRLWKADlQEER---TNEDCIVKIDGVKTRVPGGGTV 152 Odoribacter sp...
CDE03376       78 QKk--DKPYCEKIMFVRCGQVTPTHFHWLKTEDIINRDGGILCMRLWKADkETEML--TEEPLVVSIDGVSTRVAPGETV 153 Bacteroides un...
WP_013255525   78 GSy--AKPYAEKIMVVGEEQETPFHFHWNKMEDIINRGGGKLAFELYMSDaQDGf---STQSVTVSVDGVQRVLEAGERL 152 Sediminispiroc...
vbi:Arad_8189  78 GVe-gERTYAEKLLFVEEGQVTPTHRHAAKMEDIINRAGGDLIIEFAATD-AAGNV--TKDDVTVPVDGLPFRLAAWEPL 153 Agrobacterium ...
3MPB_A        175 RLSPGESICLPPGLYHSFWAEagFGDVLVGEVSSVNDDDHDNHFLQPLDRYNLIDEDEPAQLVLCNEYR 243
jgi:HSM_0820  155 RLSPGQSICLPPMLYHSFWAE--DSDVLVGEVSMTNDDLTDNRFLESLGRFSTIQENEQPIRLLCSDYK 221 Histophilus somni 2336
Q9CL68        155 KLKPGQSICLTPFLYHSFWAE--DGVVLAGEVSMANDDLTDNRFLAPLGRFSHIEEDEPPLHLLCSDYP 221 Pasteurella multocida
WP_015871090  157 LLKPGQGVCIPPYTYHRFWAE--KASVLGWEVSMVNDDHTDNRFLVPLSRFAEIEEDEPVKWVLCNEYQ 223 Edwardsiella ictaluri
jgi:Tola_0050 156 RLTAGQSISLTQGLYHSFWAEpgHGPVILGEVSMVNDDRRDNRFLRPQSRFSEIEEDTDPLHLLCNEYA 224 Tolumonas auensis DSM 9187
CCY39200      154 RLNPGESITLEPYIYHQFWAE--KETCIIGEVSKVNDDSNDNRFYEPLGRYPEIEEDESPLFLLCTEYl 220 Tannerella sp. CAG:118
CCZ06448      153 CLENGQSICFEPYMYHTFWAE--GGDCMVGEVSTVNDDANDNRFFEPIGRFPAIEEDCPAEYLLCTEYP 219 Odoribacter sp. CAG:788
CDE03376      154 RLAPGQSICYEPYLYHTFWAE--DDHCLVGEVSTVNDDMRDNRFLTPKGRFPQIEEDVPAEHLLCNEYP 220 Bacteroides uniformis CAG:3
WP_013255525  153 VLDPGSSLSLPQRLYHRFFAVkgYGKVMCGEVSMVNDDDSDNRFKEELGRFPAIEEDVPPTRLMVGDYR 221 Sediminispirochaeta smara...
vbi:Arad_8189 154 VLSPGQSVTIHTGLYHRFYGRkgDGPVLVGEVSQVNDDNNDNFFLEPIGRFAAIEEDEPPLRPLWNeag 222 Agrobacterium radiobacter...
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