1XTL,1PZS,1EQW,3L9Y


Conserved Protein Domain Family
Sod_Cu

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pfam00080: Sod_Cu (this model, PSSM-Id:395033 is obsolete and has been replaced by 459663)
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Copper/zinc superoxide dismutase (SODC)
superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.
Statistics
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PSSM-Id: 395033
Aligned: 418 rows
Threshold Bit Score: 44.873
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1XTL_C                 29 REGk--AV-GFIEIK----ESDdegLDIHISANSLRp----gASLGFHIYEKG----------SC-VRpdFESAGGHFNP 86  Bacill...
KJE97122               33 tptqgnVAqGTIRLDvvseQL----TRITANITGLAa----nSVHGFHIHELG----------ALdAQg--LASGGHYNP 92  Capsas...
tgen:AM1_5239          55 apTegnQVsGSVKFR----QIEd-kVTIAVNLKGLQp----dSVHAWHIHEFG----------DA-SSldgKAMGGHYNP 114 Acaryo...
CCG84096              117 APGrntTPyGFIEFVyts----etsARIEVRLTNMPed--rgP-FSYHIHTDRvsehitdppeQC------KAAKGHLDP 183 Taphri...
XP_003890229           53 tGh--fNVsGQIHFAlqpe---snaVAVSISINGLNalnstaA-YAYHIHTNPiss-----dgNC------ASALGHLDP 115 Puccin...
KEI40921               74 GGk--fNVeAIFNFEfre----gegTFIEGRV--LRglndstE-YRYHIHTNPisa-----dgNC------ASALGHLDP 133 Mixia ...
CBW74143               44 AAGh--AArGTVTLI----EHAd-gVQVTYNLSGLPp----dSDHALQIHERG----------DC-HSp--GAAGGVFSP 99  Parabu...
calssnu:BYI23_A006190  47 TPGn--AArGTVTLI----ERAd-gVQVSYSLTDMPp----nSDHALAVHERG----------DC-IAvnDQDASPVFAL 104 Burkho...
Q63W87                 47 TVGs--QArGTVTLA----ERPd-gVQVTYNFAGLPp----nSDHALQVHERG----------DC-NAadGSSAGAVFAP 104 Burkho...
Q143I3                 44 TVGn--QArGLVTFI----ERSd-gVQVTYNLAGMPp----nSDHALQVHERG----------DC-NAadGSSAGQVFSP 101 Parabu...
1XTL_C                 87 --LNKEHGFnnpm----ghhAGDLPNLEVGADGK-VDVIMn------------APdTSLKkgsklnIldedGSAFIIHEQ 147 Bacill...
KJE97122               93 --FNVTHACpgtga--avrhVGDLGNIKADANGN-AVYDEv------------NElVKLNgi--tsVi---GRAFILHLN 150 Capsas...
tgen:AM1_5239         115 --EGKPHGLpnnp----erhAGDLGNLKADSRGE-VIREIn------------VNnITINgpk-npIl---GRGMIIHAE 171 Acaryo...
CCG84096              184 --ANVGEAfvcdsekkggcqAGDLT-------GKyGKIpasikssqvykevydEKyISWKasdanfFv---NRSIVIHEA 251 Taphri...
XP_003890229          116 --LNVTDGlvcnpqisqycqEGDLS-------SRhGKFngsest---lnlayiDDyLRFWpqp-fsIl---GRSVVVH-L 178 Puccin...
KEI40921              134 --VSVTDYiacdpsqpwycqEGDLS-------GKhGKLqgtvngn-tpafsfiDPyVRFYpqp-fsIl---GRSVVIH-A 198 Mixia ...
CBW74143              100 gaERLKQGir---------lEGDLVNLHADANGVaAGFIVs-----------pD--VSLDgv--rsVv---GRALIVHRD 152 Parabu...
calssnu:BYI23_A006190 105 paERRKASar---------lEGELGNIHADATGSaTGFIVa-----------tD--VSLDgv--rsVi---SRAIMLHRE 157 Burkho...
Q63W87                105 aaDRLRAGar---------vGGDLGNIHADANGVaAGFITa-----------pD--LALDgv--rsVl---GRSVLVHRD 157 Burkho...
Q143I3                102 aaERLKTGar---------vEGDLGNIHADANGVaTGFIVa-----------pD--VSLDgi--rsVl---QRAVLLHHD 154 Parabu...
1XTL_C                148 ADDYLTNPSGNSGARIVCGA 167 Bacillus subtilis
KJE97122              151 PDDCVTQPVGNAGSRIAQGV 170 Capsaspora owczarzaki ATCC 30864
tgen:AM1_5239         172 TDDG-GQPTGNAGSRIAQGV 190 Acaryochloris marina MBIC11017
CCG84096              252 SN----------KGRIACAN 261 Taphrina deformans PYCC 5710
XP_003890229          179 PN----------STRIACGN 188 Puccinia graminis f. sp. tritici CRL 75-36-700-3
KEI40921              199 PD----------LTRVTCGN 208 Mixia osmundae IAM 14324
CBW74143              153 AQDYYAFPPRDAGPALGCGI 172 Paraburkholderia rhizoxinica HKI 454
calssnu:BYI23_A006190 158 AMDPYASAPHNVGPALACGV 177 Burkholderia sp. YI23
Q63W87                158 PADP-AFPQHGAGPALACGV 176 Burkholderia pseudomallei
Q143I3                155 ATDPYAYPQHGAGPALACGL 174 Paraburkholderia xenovorans LB400
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