5IP2


Conserved Protein Domain Family
Tospo_nucleocap
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pfam01533: Tospo_nucleocap 
Tospovirus nucleocapsid protein
The tospovirus genome consists of three linear ssRNA segments, denoted L, M and S complexed with the nucleocapsid protein. The S RNA encodes the nucleocapsid protein and another non-structural protein.
Links
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Statistics
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PSSM-Id: 396218
Aligned: 3 rows
Threshold Bit Score: 446.473
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
5IP2_A  22 MSKVKLTKENIVALLTQGKDLEFEENQNLVAFNFKTFCLENLDQIKKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIK 101
P25999   1 MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENIDQIKKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIK 80  Tomato spotted wilt v...
P25999   1 MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENIDQIKKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIK 80  Tomato spotted wilt v...

5IP2_A 102 KTSDRIGATDMTFRRLDSLIRVRLVEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFE 181
P25999  81 KTSDRIGGTDMTFRRLDSLIRVRLVEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFE 160 Tomato spotted wilt v...
P25999  81 KTSDRIGGTDMTFRRLDSLIRVRLVEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFE 160 Tomato spotted wilt v...

5IP2_A 182 MISVVLAIYQDAKYKDLGIDPKKYDTKEALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSSNPNAKGSVAMEHYSETLN 261
P25999 161 MISVVLAIYQDAKYKDLGIDPKKYDTKEALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSSNPNAKGSVAMEHYSETLN 240 Tomato spotted wilt v...
P25999 161 MISVVLAIYQDAKYKDLGIDPKKYDTKEALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSSNPNAKGSVAMEHYSETLN 240 Tomato spotted wilt v...

5IP2_A 262 KFYEMF 267
P25999 241 KFYEMF 246 Tomato spotted wilt virus (strain Brazilian BR-01)
P25999 241 KFYEMF 246 Tomato spotted wilt virus (strain Brazilian BR-01)
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