5KZ9


Conserved Protein Domain Family
Retro_M

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pfam02813: Retro_M (this model, PSSM-Id:280904 is obsolete and has been replaced by 460707)
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Retroviral M domain
Retroviruses contain a small protein, MA (matrix), which forms a protein lining immediately beneath the phospholipid membrane of the mature virus particle. MA is located in the N-terminal region of the Gag precursor polyprotein. The N-terminal segment of MA proteins directs the Gag protein to the plasma membrane where budding takes place, and has been called the M domain. This domain forms an alpha helical bundle structure.
Statistics
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PSSM-Id: 280904
Aligned: 3 rows
Threshold Bit Score: 159.942
Created: 19-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5KZ9_A    2 EAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSPSDLYSPGSWDPITAALSQRAMILGKSGELKTWGLVLGAL 81   Rous sarcoma virus ...
Q04095    2 EAVIKVISSACKTYCGKISPSKKEIGAMLSLLQKEGLLMSPSDLYSPGSWDPITAALSQRAMVLGKSGELKTWGLVLGAL 81   Rous sarcoma virus ...
Q04095    2 EAVIKVISSACKTYCGKISPSKKEIGAMLSLLQKEGLLMSPSDLYSPGSWDPITAALSQRAMVLGKSGELKTWGLVLGAL 81   Rous sarcoma virus ...
5KZ9_A   82 KAAREE 87   Rous sarcoma virus - Prague C
Q04095   82 KAAREE 87   Rous sarcoma virus (strain Schmidt-Ruppin A)
Q04095   82 KAAREE 87   Rous sarcoma virus (strain Schmidt-Ruppin A)
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