Conserved Protein Domain Family
RIFIN

?
pfam02009: RIFIN 
Rifin
Plasmodium falciparum is the causative agent of deadly malaria disease. It encodes repetitive interspersed families of polypeptides (RIFINs), which are expressed on the surface of infected erythrocytes. All RIFIN sequences contain the PEXEL motif (a pentameric sequence RxLxE/Q/D, known as the Plasmodium export element) required for correct export and surface expression or host-targeting (HT) signal which plays a central role in the export of proteins into the host cell. It has been reported that PEXEL is preferably located 15-20 amino acids downstream of an N-terminal hydrophobic signal sequence. The RIFIN protein family can be divided into A and B types based on the presence or absence of a 25 amino acid motif located approximately 66 amino acids downstream of the PEXEL motif, with A- and B-types serving different roles in distinct parasite stages. The specific type B RIFIN variant (PF13_0006) is expressed on the surface of free merozoites, internally in developing gametocytes and on the surface of gametes at the point of emerging from activated, mature stage V gametocytes. While type A RIFIN are expressed on the infected erythrocyte surface, potentially contributing to the antigenic variation capacity of the parasite.
Statistics
?
PSSM-Id: 396547
Aligned: 112 rows
Threshold Bit Score: 205.937
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q8I217        31 HIQTNRLLCECQLYAPQNYDNDPEMKRVMQQFHDRTTQRFQEYDERLQEKRQVCKDTCDKEIQKIILKDKLEKELMDKFA 110 Plasmodium falc...
Q9NFB0        37 QTKTHRTLCECELYAPSNYENDSEMKEVMEIFDRQTSERFREYDERMQHKRKQCKEQCEKDIQKIILKDKIEKELTEKFG 116 Plasmodium falc...
Q8IBD9        34 KIPITRLLCECELYAPSNYDNDPEMKEVMEIFDRQTSERFHEYDERMKTTRQKCREQCDKEIEKIILKDKLEKELMDKFA 113 Plasmodium falc...
Q8IHM2        34 KVPTTRLLYECELYIP-NYDNDPEMKRIMQQFDDRTSQRFHEYDNRMIEKQQKCKDQCDKEIQKIILKDKLEKELMEKFA 112 Plasmodium falc...
O97325        31 PKATTRTLCECELYAPSNYDSDPEMKRVMQQFVDRTTQRFHEYDERMKTTRQKCKEQCDKEIQKIILKDKLEKQMAQQLT 110 Plasmodium falc...
Q8I214        31 HTQTTRSLCECELYSPANYDSDPQMKEVMENFIKQTQQRFHDYDDRMKEKRKQCKERCDKEIQKIILKDKLEKELMDKFA 110 Plasmodium falc...
Q8IK38        30 HTYTNRSLCECELYELANYDNDPQMKEVMENFIKQTQQRFHEYDERLQSKRKQYKDKCDKEIQKIILKDKLEKQMAQQLT 109 Plasmodium falc...
Q8IEU8        34 KIPTTRSLSECELYAPVNYYSDPQMKEVMDNFNKQTQQRFHEYDERMKTTRQKCKDKCDKEIQKIILKDKLEKQMAQQFS 113 Plasmodium falc...
O97309        42 PTKSYRSLCERELYAPANYDNDTEMKRVMQQFEDRTSQRFHEYDERMQSKRMQCKEQCDKEIQKIILKDKLEKQMEQQLT 121 Plasmodium falc...
XP_002809133  37 PTRTHRTLCECKLYAPSNYENDPDMKELMENFNRQTSERFRQYDEKIQDKRKQCKEKCEKDIQKIILKDKIEKELTENIG 116
Q8I217       111 TLQTDIQSDAIPTCICEKSLADKVEKGCLRCAQNLgGIVAPSSGVLAGIAEGAlyaWKPKALEASIKTAIAegtanilaa 190 Plasmodium falc...
Q9NFB0       117 ALQTDIRTEDIPTCVCEKSVADKTEKVCLNCGKTM-GAVAPAWGFVSGIGYVA---WTQYVAAKILEVGIK--------- 183 Plasmodium falc...
Q8IBD9       114 TLHTDMQSDAIPTCVCEKSVADKTEKVCLNCGKTM-GAVAPAWGLISGLWYAT---WSQYVSAKILEVGIS--------- 180 Plasmodium falc...
Q8IHM2       113 TLQTDIQNDAIPTCVCEKSLADKTEKFCLNCGKTM-GAVAPAWGLISCIGYVG---WSQYVAAKIVEAGIK--------- 179 Plasmodium falc...
O97325       111 TLDPNITTEDIPTCICEKSLADKTEKFCLNCGKTM-GGVAPGWGLVSGLGYVG---WTNYVTQTALQKGIE--------- 177 Plasmodium falc...
Q8I214       111 TLHTDIQSDSIPTCVCEKSLADKTEKFCLNCGKTM-GGVAPGWGLVGGLWYAT---WSQYVTKTAIQKGIE--------- 177 Plasmodium falc...
Q8IK38       110 TLDPNITTEDIPTCVCEKSLADKTEKFCLNCGKTM-GGVAPGWGLVSGLGYAG---WSHYAATTLVKIATD--------- 176 Plasmodium falc...
Q8IEU8       114 TLHTDIQSDDIPTCICEKSLADKVEKGCLRCAQNL-GGVAPGWGLLSGFGYVT---WSQYISGIAAKAAAD--------- 180 Plasmodium falc...
O97309       122 TLETKIDTDDIPTGVCEKSLADKTENFCLNCGKNM-TAIAPWWGLVCGVGYAG---WSHYVPIAVAKAAMD--------- 188 Plasmodium falc...
XP_002809133 117 ALQTDIRTEDIPTCVCEKSIADKTEKVCVNCGKTM-GAVAPAWGLVSGLGYAA---WMNYVAGFAAKAATN--------- 183
Q8I217       191 gveAGE----VTGKELVIAgLKK-MG------ISTLd-NK-----S-LESY--F-AT-----TSYKNITNIAQAVQKLYF 244 Plasmodium falc...
Q9NFB0       184 -----------KSVQVS---LDKvME------IVTQihSLttaeiPkFSAAqiL-SS-----GNFTNNISLIDMVQYL-- 235 Plasmodium falc...
Q8IBD9       181 -----------EGIKEG---LTQiMK------FTISlyPKanlpnItVTQM--L-SS-----GKFTNNVTLFDMVQHI-- 230 Plasmodium falc...
Q8IHM2       180 -----------NGLEVG---LLKvTEaa--tsMSQLtaSD-----IpKITIekMlSS-----GTFTDKMTFSDICNYI-- 231 Plasmodium falc...
O97325       178 -----------AGVKAG---------------IEELkgFPglrklIkVSQIqsFiNP-----ANYAEETTYFNFIKQVe- 225 Plasmodium falc...
Q8I214       178 -----------AGVKWG---------------IQELkvFHslyrlIeVSQIqsFiNP-----ANYAEKTTYFSFVKSV-- 224 Plasmodium falc...
Q8IK38       177 ---AGIaeglKVGLTKVTE-IVTqLSsstevaIPTI---------DvLTNL----TT-----GISADNVTLLGIFKTIn- 233 Plasmodium falc...
Q8IEU8       181 -----------AGLKAG---VKVgLVnavkivTKTLd-GFgevptMdWAKLiaF--------GDFSDGVTLHAIFKNL-- 235 Plasmodium falc...
O97309       189 -----------AGMNVV---INAlKK-------------------LgVEKLtaViLKeisrtGNYANIINFSSIISTELK 235 Plasmodium falc...
XP_002809133 184 -----------AGVKEA---IKGlGNiyflneFSYI---------DlATKV----TA-----TNFDKTVELIQIVNGVs- 230
Q8I217       245 etcacdssgkvvylygdanrhipicnsvwnqtPA--VLT--TKKGISTKEVIEKTVQTMVS--DAEGVAADASA----AK 314 Plasmodium falc...
Q9NFB0       236 -------------------------------------RNnmYGVIESQKCERFGFILDTMG--KNTLKVFNRNYhiqvEA 276 Plasmodium falc...
Q8IBD9       231 ------------------------------------NNTmyTTLEAEEYSKFCGVVSSMA---KYKNITFNRTYgkysTA 271 Plasmodium falc...
Q8IHM2       232 ------------------------------------NTImsSELESKGYTKYTFALENIAKp-SKIKYHYSKQS----AD 270 Plasmodium falc...
O97325       226 -----------------------------------------NTKCVVKEHTFCYSTYISKE--NALSQRASEIA----KN 258 Plasmodium falc...
Q8I214       225 ------------------------------------------------------------------------------NS 226 Plasmodium falc...
Q8IK38       234 -----------------------------------iGMKgeFDTDTYALFSTWVQNIATTP--KSYMGRYLTEA----EE 272 Plasmodium falc...
Q8IEU8       236 ------------------------------------NNMmnCYLDSGKYSQFSTVVQKFAEnpRSYATPYSTEV----TE 275 Plasmodium falc...
O97309       236 --------------------------------AVcrVTLssPSDGAMREGICSILKKGRTP--PTVEQVVSGAFklidEK 281 Plasmodium falc...
XP_002809133 231 -----------------------------------nMCGksGLADDTAFCMAKEVISKKPG--MLFARTISQKTakvaAD 273
Q8I217       315 SAELTAAIKAREAEVINTIFMSKQTAIIASVVAILIIVLIMLIIYLILRYRRKKKMKKKLQYIKLLNQ 382 Plasmodium falciparum 3D7
Q9NFB0       277 VKNAVDAAEAAESLKLATNTSILTNTIIASVIAILVIVLVMVIIYLILHYRRKKKMKKKLQYIKLLKE 344 Plasmodium falciparum 3D7
Q8IBD9       272 VTEAVTQGKTNAINTLTPATNTLTTAIIASMVAIVVIVLVMIIIYLILRYRRKKKMKKKLQYIKLLEE 339 Plasmodium falciparum 3D7
Q8IHM2       271 VLAAITEGKTAESLKLSPYTSILTNTIIASIIAIVVIVLVMVIIYLILRYRRKKKMKKKLEYMKLLKE 338 Plasmodium falciparum 3D7
O97325       259 AADMAKLAEREVLDKAAPVTSGLNTAIIASIVAILVIVLVMIIIYLFLRYRKNKKMKKKLQYIKLLEE 326 Plasmodium falciparum 3D7
Q8I214       227 TKCVGKAVNTEPFCNFVSLNGESALSDRAAVIAK-----------------------DAAYMAEVAKE 271 Plasmodium falciparum 3D7
Q8IK38       273 VTKAFADAQTRVLTQAGNVTSNLTTGITVSIIAIVVIVLVMLIIYLILRYRRKKKMKKKLQYIKLLKE 340 Plasmodium falciparum 3D7
Q8IEU8       276 VTKAVADAKTGVLTKAGNATSSLSTGITASIIAIVVIVLIMVIIYLVLRYRRKKKMKKKLQYIKLLEE 343 Plasmodium falciparum 3D7
O97309       282 APQAAKAAKQIEAANYTSTTSSLTTGIIASIIAIVIIVLIMVIIYLILRYRRKKKMKKKLQYIKLLEE 349 Plasmodium falciparum 3D7
XP_002809133 274 AGQAAKTAAANETAKFATNTIILTNTIISSIVAIVVIVLVMVIIYLILRYLRKSKMKKKLHYIKLLKE 341
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap