Conserved Protein Domain Family
HMG-box_NHP10-like
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cd22016: HMG-box_NHP10-like 
high mobility group (HMG)-box found in Saccharomyces cerevisiae non-histone protein 10 (NHP10) and similar proteins
NHP10, also called high mobility group protein 2, is probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex.
Links
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Statistics
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PSSM-Id: 438832
Aligned: 17 rows
Threshold Bit Score: 102.027
Created: 25-Jun-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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putative DNA
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
Scroll to Sequence Alignment Display
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1                 ## #####  ##      #                      ##  #  ##      #   #  #   #  # 
Q03435         87 KERDPNmPKRPTNAYLLYCEMNKERIRQng---------------slDVTRDLAEGWKNLNeQDRKPYYKLYSEDRERYQ 151  Saccharomyces...
RWS29550      131 RETGPT-PKKPINPYLLFCQENRSTIQEkyfqqnn------semsnqELTKALAQNWHDLSsDDKQVYYDLYEQEKERYE 203  Leptotrombidi...
XP_009050813  135 KEKDPNaPKKPSNVFQIYCKEQKQKVQAvyfqefn------eeiahhELTRRLAQKWHVMSqEEKKMYYEMHDIENERYQ 208  owl limpet
OON04898      723 KLSDPNaPKRPANAFMLFCDLQRENLKEerkelqksmpgseqevalsNLTKALGYRWRILDdSERKHYQDLFKEQVKQYD 802  Batrachochytr...
CCJ29965      135 RTRDPDaPKRPSNPFLKFCDVQREKIRSeneg-----------vdrfDVTRALGAAWQNLDdESRKPYYDAYELEKKQFK 203  Pneumocystis ...
RKO99676        2 PKADPNaPKRPANAFFTFCQLKRESVKRllgrt---------dfsvkDSTRLLGQLWRDLRdEERQIYWKIYVLSRERHK 72   Caulochytrium...
GAV28176      169 RARDPRePKRPTNAYLFFCDSERDRVKAewaenh--------pnehiDLSRAMTDVWRKMSnDDKKPYFEMYEKDKERYH 240  Pichia membra...
CUS09899      164 GSRSKGgPKRPPNAYMIFCEKERDAVREresk-----------kdgfDMHKALAQAWRDLKaEGQKPYFNEYEKNREKYL 232  summer truffle
XP_025094085  157 KDKDPSaPKKPANAFLMFCQQRRPAIQEeylrehk------qeiahhEMTRRLAQQWNNLSqDDKKLYFELYEQEKERYE 230  Pomacea canal...
OLL25414      203 LAKDPHaPKRPANAFLKFCDLERERVRSeneg-----------vegfEMTKAMGVAWQNLDeEGRKPYYDLYEQDKQRYE 271  Neolecta irre...

Feature 1               
Q03435        152 MEMEIY 157  Saccharomyces cerevisiae S288C
RWS29550      204 TEMKAY 209  Leptotrombidium deliense
XP_009050813  209 RELKVY 214  owl limpet
OON04898      803 LELSNY 808  Batrachochytrium salamandrivorans
CCJ29965      204 IKMDEY 209  Pneumocystis jirovecii
RKO99676       73 VDLASY 78   Caulochytrium protostelioides
GAV28176      241 KAVEEF 246  Pichia membranifaciens
CUS09899      233 EKVNDL 238  summer truffle
XP_025094085  231 KELKEY 236  Pomacea canaliculata
OLL25414      272 REMESY 277  Neolecta irregularis DAH-3

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