2E31,1LDK,1P22,2OVP,2P1M,3L2O,3MKS,3WSO,4I6J,5VZT,6BRO,6BYH,6O60


Conserved Protein Domain Family
F-box_SF

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cd09917: F-box_SF 
Click on image for an interactive view with Cn3D
F-box domain superfamily
This short domain is commonly found at the N-terminus of various proteins, and typically co-occurs with one or more other conserved domains or motifs, such as leucine rich repeats, WD40 repeats, kelch, tub, spry, and others. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. One of the best researched roles of F-box proteins is their participation in SCF (Skp1-Cul1-F-box protein), a multi-protein complex that functions as a ubiquitin E3 ligase, where the role of the F-box protein is to recruit target substrates. Gene families containing the F-box are found greatly expanded in narrow taxonomic lineages, such as flowering plants and nematodes. In this hierarchical classification, many of the subfamilies are named according to their domain architectures.
Statistics
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PSSM-Id: 438852
Aligned: 732 rows
Threshold Bit Score: 27.7936
Created: 18-Nov-2009
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Skp1 bindingF-box motif
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:Skp1 binding site [polypeptide binding site]
Evidence:
  • Comment:F-box proteins participate in SCF (Skp1-Cul1-F-box protein) complexes that function as ubiquitin E3 ligases, where the role of the F-box protein is to recruit target substrates.
  • Structure:2E31; Mus musculus FBXO2 in complex with Skp1, contacts at 4A
  • Structure:2P1M; Arabidopsis thaliana TIR1 in complex with Skp1, contacts at 4A
  • Structure:3MKS; Saccharomyces cerevisiae CDC4 in complex with Skp1, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #   #  ##  ##     # ##    ### #     
2E31_A         52 AELPePLLLRVLAELp--ATELVQacrlVCLrWKELVD 87   house mouse
AAN71350       79 EKLPdKVLLHIFSYLs--HREICRla-rICRrWRQIAY 113  fruit fly
Q54GJ0        133 DNLPsEVIEKIFSYLf--EYDIYRvs-lVCNyWNQIAK 167  Dictyostelium discoideum AX4
XP_001640645    7 TKLPdAVLLEIFLYLs--RRDLGVva-rVCKqWRRIAY 41   starlet sea anemone
EFX89789       33 DKLPdKVVLQIFSYLs--HREICRla-rTCRkWRMIAY 67   common water flea
KZT35166        6 LELSeDVIIHMFKFSslsITDIVQfs-rTCRpFRKIAY 42   Sistotremastrum suecicum HHB10207 ss-3
OQR67555       38 DKLPeKVLLNIFQYLp--SREVGRla-rVCRkWRQVSQ 72   Tropilaelaps mercedesae
PFX21109        2 DFLPeIVILKVFSFLp--VGDLGKaa-gVCRyWRRLAY 36   Stylophora pistillata
RDD46506       13 LNLPdEVIEFIITTSslgLLDIIHvs-aTCKqLRDIAC 49   Trichoplax sp. H2
XP_031556836    2 DGLPdVVLLKIFSFLp--IADLGRac-rVCSqWQRIAY 36   Australian red waratah sea anemone

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