Conserved Protein Domain Family
Paramyxo_ncap
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pfam00973: Paramyxo_ncap 
Paramyxovirus nucleocapsid protein
The nucleocapsid protein is referred to as NP. NP is is the major structural component of the nucleocapsid. The protein is approx. 58 kDa. 2600 NP molecules go to tightly encapsidate the RNA. NP interacts with several other viral encoded proteins, all of which are involved in controlling replication. {NP-NP, NP-P, NP-(PL), and NP-V}.
Links
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Statistics
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PSSM-Id: 395775
Aligned: 9 rows
Threshold Bit Score: 995.105
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
AFC87759   1 MATLLKSLALFKRNKDKAPTASGSGGAIRGIKNVIIVPIPGDSSIITRSRLLDRLVRLAGDPDINGSKLTGVMISMLSLF 80 
P35972     1 MATLLRSLALFKRNKDKPPITSGSGGAIRGIKHIIIVPIPGDSSITTRSRLLDRLVRLIGNPDVSGPKLTGALIGILSLF 80  Measles virus strai...
P04851     1 MATLLRSLALFKRNKDKPPITSGSGGAIRGIKHIIIVPIPGDSSITTRSRLLDRLVRLIGNPDVSGPKLTGALIGILSLF 80  Measles virus strai...
Q03332     1 MASLLKSLALFKRAKDKPPLAAGSGGAIRGIKHVIVVPIPGDSSITTRSRLLDRLVKMVGDPDISGPKLTGALISILSLF 80  Rinderpest virus (s...
BAK40018   1 MASLLKSLALFKKNKDKPPLAAGSGGAIRGIKHVIIVPIPGDSSITTRSRLLDCLVKMVGDPDISGPKLTGALISILSLF 80 
P41359     1 MASLLKSLALFKKNKDKPPLAAGSGGAIRGIKHVIIVPIPGDSSITTRSRLLDRLVKMVGDPDISGPKLTGALISILSLF 80  Rinderpest virus (s...
Q66412     1 MATLLRSLALFKRNKDRTPLIAGSGGAIRGIKHVIVVPVPGDSSIVTRSRLLDRLVRLAGDPYISGPKLTGVMISILSLF 80  Dolphin morbillivirus
P04865     1 MASLLKSLTLFKRTRDQPPLASGSGGAIRGIKHVIIVLIPGDSSIVTRSRLLDRLVRLVGDPKINGPKLTGILISILSLF 80  Canine distemper vi...
P35944     1 MASLLKSLSLFKKTREQPPLASGSGGAIRGIKHVIIVLIPGDSSIVTRSRLLDRLVRMVGDPEVSGPKLTGVLISILSLF 80  Phocine morbillivirus

AFC87759  81 VESPGQLIQRITDDPDVSIRLVEVVQSTRSQSGLTFASRGADLDNEADMYFSTEGPSSGSKKRINWFENREIIDIEVQDA 160
P35972    81 VESPGQLIQRITDDPDVSIRLLEVVQSDQSQSGLTFASRGTNMEDEADKYFSHDDPISSDQSRFGWFENKEISDIEVQDP 160 Measles virus strai...
P04851    81 VESPGQLIQRITDDPDVSIRLLEVVQSDQSQSGLTFASRGTNMEDEADQYFSHDDPISSDQSRFGWFENKEISDIEVQDP 160 Measles virus strai...
Q03332    81 VESPGQLIQRITDDPDISIKLVEVVQSDKTQSGLTFASRGTSMDDEADRYFTYEEPNDGEERQSYWFENRDIQDIEIQDP 160 Rinderpest virus (s...
BAK40018  81 VESPGQLIQRITDDPDISIKLVEVIQSDKTQSGLTFASRGASMDDEADRYFTYDEPNGGEERQSYWFENREIQDIEVQDP 160
P41359    81 VESPGQLIQRITDDPDISIKLVEVVQSDKTQSGLTFASRGTSMDDEADRYFTYDEPNDGEERQSYWFENREIQDIEVQDP 160 Rinderpest virus (s...
Q66412    81 VESPSQLIQRITDDPDVSIRLVEVIQSEKSLSGLTFASRGANMEDEADDYFSIQAGEEGDTRGTHWFENKEIVEIEVQDP 160 Dolphin morbillivirus
P04865    81 VESPGQLIQRIIDDPDVSIKLVEVIPSINSACGLTFASRGASLDSEADEFFKIVDEGSKAQGQLGWLENKDIVDIEVDNA 160 Canine distemper vi...
P35944    81 VESPGQLIQRIIDDPDISIKLVEVIPSINSTCGLTFASRGASLDAEADEFFGTMDEGSKDHNQMGWLENKDIIDIEVNDA 160 Phocine morbillivirus

AFC87759 161 EEFNMLLASILAQVWILLAKAVTAPDTAADSELRRWVKYTQQRRVIGEFRLDKGWLDAVRNRIAEDLSLRRFMVSLILDI 240
P35972   161 EGFNMILGTILAQIWVLLAKAVTAPDTAADSELRRWIKYTQQRRVVGEFRLERKWLDVVRNRIAEDLSLRRFMVALILDI 240 Measles virus strai...
P04851   161 EGFNMILGTILAQIWVLLAKAVTAPDTAADSELRRWIKYTQQRRVVGEFRLERKWLDVVRNIIAEDLSLRRFMVALILDI 240 Measles virus strai...
Q03332   161 EGFNMILATILAQIWILLAKAVTAPDTAAESELRRWVKYTQQRRVIGEFRLDKGWLDTVRNRVAEDLSLRRFMVALILDI 240 Rinderpest virus (s...
BAK40018 161 EGFNMILATILAQIWILLAKAVTTPDTAADSELRRWVKYTQQRRVIGEFRLDKGWLDTVRNRIAEDLSLRRFMVALILDI 240
P41359   161 EGFNMILATILAQIWILLAKAVTAPDTAADSELRRWVKYTQQRRVIGEFKLDKGWLDTVRNRIAEDLSLRRFMVALILDI 240 Rinderpest virus (s...
Q66412   161 EEFNILLASILAQIWILLAKAVTAPDTAADSETRRWIKYTQQRRVVGEFRLDKGWLDAVRNRIAEDLSLRRFMVALILDI 240 Dolphin morbillivirus
P04865   161 EQFNILLASILAQIWILLAKAVTAPDTAADSEMRRWIKYTQQRRVVGEFRMNKIWLDIVRNRIAEDLSLRRFMVALILDI 240 Canine distemper vi...
P35944   161 EQFNILLASILAQIWILLAKAVTAPDTAADSEMRRWIKYTQQRRVIGEFRMNKIWLDIVRNRIAEDLSLRRFMVALILDI 240 Phocine morbillivirus

AFC87759 241 KRTPGNKPRIAEMICDIDNYIVEAGLASFILTIKFGIETMYPALGLHEFAGELSTIESLMNLYQQLGEVAPYMVILENSI 320
P35972   241 KRTPGNKPRIAEMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFAGELSTLESLMNLYQQMGETAPYMVNLENSI 320 Measles virus strai...
P04851   241 KRTPGNKPRIAEMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFAGELSTLESLMNLYQQMGKPAPYMVNLENSI 320 Measles virus strai...
Q03332   241 KRTPGNKPRIAEMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFAGELSTIESLMNLYQQMGELAPYMVILENSI 320 Rinderpest virus (s...
BAK40018 241 KRTPGNKPRIAEMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFAGELSTIESLMNLYQQMGELAPYMVILENSI 320
P41359   241 KRTPGNKPRIAEMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFAGELSTIESLMNLYQQMGELAPYMVILENSI 320 Rinderpest virus (s...
Q66412   241 KRTPGNKPRIAEMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFSGELTTVESLMNLYQQMGETAPYMVILENSI 320 Dolphin morbillivirus
P04865   241 KRSPGNKPRIAEMICDIDNYIVEAGLASFILTIKFGIETMYPALGLHEFSGELTTIESLMMLYQQMGETAPYMVILENSV 320 Canine distemper vi...
P35944   241 KRSPGNKPRIAEMICDIDNYIVEAGLASFILTIKFGIETMYPALGLHEFSGELTTIESLMVLYQQMGETAPYMVILENSV 320 Phocine morbillivirus

AFC87759 321 QNKFSAGAYPLLWSYAMGVGVELENSMGGLNFGRSYFDPAYFRLGQEMVRRSAGKVSSVIAAELGITAEEAKLVSEIASQ 400
P35972   321 QNKFSAGSYPLLWSYAMGVGVELENSMGGLNFGRSYFDPAYFRLGQEMVRRSAGKVSSTLASELGITAEDARLVSEIAMH 400 Measles virus strai...
P04851   321 QNKFSAGSYPLLWSYAMGVGVELENSMGGLNFGRSYFDPAYFRLGQEMVRRSAGKVSSTLASELGITAEDARLVSEIAMH 400 Measles virus strai...
Q03332   321 QNKFSAGAYPLLWSYAMGIGVELENSMGGLNFGRSYFDPAYFRLGQEMVRRSAGKVSSNLASELGITEEEARLVSEIAAY 400 Rinderpest virus (s...
BAK40018 321 QNKFSAGAYPLLWSYAMGVGVELESSMGGLNFGRSYFDPAYFRLGQEMVRRSAGKVSSNLASELGITEEEAKLVSEIAAY 400
P41359   321 QNKFSAGAYPLLWSYAMGVGVELENSMGGLNFGRSYFDPAYFRLGQEMVRRSAGKVSSNLASELGITEEEARLVSEIAAY 400 Rinderpest virus (s...
Q66412   321 QNKFSAGSYPLLWSYAMGVGVELENSMGGLNFGRSYFDPAYFRLGQEMVRRSAGKVSSSLAAELGITAEDAKLVSEIAAQ 400 Dolphin morbillivirus
P04865   321 QNKFSAGSYPLLWSYAMGVGVELENSMGGLNFGRSYFDPAYFRLGQEMVRRSAGKVSSALAAELGITKEEAQLVSEIASK 400 Canine distemper vi...
P35944   321 QNKFSAGSYPLLWSYAMGVGVELENSMGGLNFGRSYFDPAYFRLGQEMVRRSAGKVSSTFAAEFGITKEEAQLVSEIVSR 400 Phocine morbillivirus

AFC87759 401 TGDERTVRGTGPRQAQVSFLQHKTDEGESPTPATREEVKAAIPNGSEGRDTKRTRSGKPRGETPGQLLPEIMQEDELSRE 480
P35972   401 TTEDKISRAVGPRQAQVSFLHGDQSENELPRLGGKEDRRVKQSRGEARESYRETGPSRASDARAAHLPTGTPLDIDTASE 480 Measles virus strai...
P04851   401 TTEDKISRAVGPRQAQVSFLQGDQSENELPRLGGKEDRRVKQSRGEARESYRETGPSRASDARAAHLPTGTPLDIDTASE 480 Measles virus strai...
Q03332   401 TSDDRNNRTSGPKQAQVSFLRTDQGSEAQHSASKKDEARAPQVKKETRTSSKSDKHKEGTDKEPVSSSAMTLIDVDTTLE 480 Rinderpest virus (s...
BAK40018 401 TGDDRNSRTSGPKQTQVSFLRTDQGGEIQHNASKKDEARVLQVRKETWASSRSDRYKEDTDNEAVSPSVKTLIDVDTTPE 480
P41359   401 TGDDRNNRTSGPKQAQVSFLRTDQGGETQNNASKRDEARAPQIRKEARTSSKSDKYKEDTDKEPMSPSVKTLIDVDTTPE 480 Rinderpest virus (s...
Q66412   401 ANDDRANRAIGPKQNQISFLHPDRGDASTPGNILRANEGDGSTRMK-RGGNIATPKGTSIDQTSTTLSKDT-LDIDEQSD 478 Dolphin morbillivirus
P04865   401 TTEDRTIRATGPKQSQITFLHSERSEVANQQPPTINKRSENQGGDKYPIHFSDERLPGYTPDVNSSEWSESRYDTQIIQD 480 Canine distemper vi...
P35944   401 TTEDRTTRATGPKQSQITFLHSERNEAPNQRLPPITMKSEFQGGDKYSNQLIDDRLSGYTSDVQSSEWDESRQITQLTQE 480 Phocine morbillivirus

AFC87759 481 SSQNPREAQRSAEALFRLQAMAKILEDQEEGEDNSQIYNDKDLL 524
P35972   481 SSQDPQDSRRSADALLRLQAMAGISEEQGSDTDTPIVYNDRNLL 524 Measles virus strain AIK-C
P04851   481 SSQDPQDSRRSAEPLLSCKPWQ-ESRKNKAQTRTPLQCTMTEIF 523 Measles virus strain Edmonston
Q03332   481 ADTDPLESKKSAEALLRLQAMAGILGDSTLGNDSLRAYNDKDIL 524 Rinderpest virus (strain RBOK)
BAK40018 481 ADTDPLGNKKSAEALLKLQAMASILEDPTLGNDSPRTYNDKDLL 524
P41359   481 VDTDPLGSKKSAEALIRLQAMASILEDSTFGNDSPRAYNDRDLL 524 Rinderpest virus (strain kuwait 82/1)
Q66412   479 NTDDPISIQKSAEALAKMRAMAKLLENQGPRDVTAHVYNDKDLL 522 Dolphin morbillivirus
P04865   481 DGND--DDRKSMEAIAKMRMLTKMLSQPGTSEDNSPVYSDKELL 522 Canine distemper virus strain Onderstepoort
P35944   481 GDHD--NDQQSMDGLAKMRQLTKILNQSDTNGEVSPAHNDRDLL 522 Phocine morbillivirus
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