Conserved Protein Domain Family
HpnC

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TIGR03464: HpnC 
squalene synthase HpnC
This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Statistics
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PSSM-Id: 274592
Aligned: 17 rows
Threshold Bit Score: 298.822
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011463850  14 PITHYENFPVASWLCPAHLRAPITALYHFARTADDLADEGDATATQRLQDLQDYRQQLTHACQT-TGA----AAdtdrka 88  Albidiferax fer...
WP_015895982  40 TESHYENFHVASWFLPKRLRPHFHSIYAYCRISDDLGDEV-GNAEQSLALLDLWGEQLDACYRG-EAR----HP------ 107 Acidobacterium ...
WP_011683035  39 ATNHYENFHVVSFLLPKRLHQDFYNVYAYCRWADDLADE-IGDPAESLRLLTWWRGELDAMYEG-RAT----HP------ 106 Candidatus Soli...
WP_011712004  24 VRANSENFPVGSLLAPARLRPHIHAVYAYARMADDFADSSEGSPKEKLQKLDDWQRRLEAAQRG-EAD----HP------ 92  Magnetococcus m...
WP_010035789  33 ARSHYENFTVVSLLLPRRLVKHFHAVYAYCRWSDDLADE-TAGGQTALDLIAWWRRELMSCYEG-EPR----HP------ 100 Gemmata obscuri...
WP_014500508  18 KGHQDENFPVASFLINPEYRPIIMAFYQFARQADDVADNVIASKKDRLAILEDMRSSLTGESQS-E-------P------ 83  Zymomonas mobilis
WP_011602623  31 RAAPAENFPVSPIVLPAAVRAHFNALYAFSRFVDNLGDEAAGD---RLALLDRVSADLSVIWAGgEPE----LG------ 97  Frankia alni
WP_011122225  12 AKASRENFLVATCLLPRAVRQPFYDLYAFCRTADDLADE-SGTPEKAVQALAEYRQAVAAMYSA-KRQdgqiAG------ 83  Rhodopirellula ...
WP_011085785  39 KGDRDENFPVASWIIHPRHRALILAYYNFVRTADDIADHATLPGDQKLAYLDLLEAELLGKGDT-QAE----A------- 106 Bradyrhizobium ...
WP_011384890   8 KTAAQENFPVASLLLPKSKRATIMAYYHFARHADDIGDSPSLTSEEKVAGLDALDRALRGTESG--PA----LV------ 75  Magnetospirillu...
WP_011463850  89 rwasVFGPLQHAVQTHQLP--APLLHDLLDAFVQDVEKTRngsgYATQAELLDYCRRSANPIGRLLLHLYGVTDTQALAL 166 Albidiferax fer...
WP_015895982 108 ----VFVALAETVRACEIP--KEPFADLLVAFRQDQTVTR----FRTMEEIHGYCRYSANPVGRLVLYTCGYRDEERFAL 177 Acidobacterium ...
WP_011683035 107 ----VLAALAPTVQRYGIP--RTPFSDLIDAFVQDQTVTR----YRDWEELFGYCRNSANPVGRLVLYLCGYSDAERQQL 176 Candidatus Soli...
WP_011712004  93 ----VFRALAYTMQQMQLP--IDPLRDLLMAFRMDITCKH----YDTTQELLEYCRYSANPVGRIVLRLAGYRDETLMGY 162 Magnetococcus m...
WP_010035789 101 ----VMLALRETVRRFDIP--PDPFLALLVAFEQDQRVKR----YDTFEQLAGYCANSANPVGHLVLRLFECFDAERAAL 170 Gemmata obscuri...
WP_014500508  84 ----NAVVLRQTLITHGLDhtIVHGLDLLEAFRRDVSVNR----YENWDALMDYCRYSASPVGRFVLDVHKESR-NLWPM 154 Zymomonas mobilis
WP_011602623  98 ----VLRLLAPTVRACDLP--AEPFERLVEANRQDQRVTR----YDTFDDLVRYCTLSADPIGRMVLGVFGLATPDRVVL 167 Frankia alni
WP_011122225  84 ----IFVALADTVHRFSIP--RQLLDDLLDAFVQDQSVVR----YRDEEQLLDYCRRSANPVGRMILRLADADSDENVLL 153 Rhodopirellula ...
WP_011085785 107 ------VVLRRALAERGMA--PRHALDVLIAFRMDVTKLR----YENWDEVIHYCRYSAMPVGRFMLDVHGEST-STWAA 173 Bradyrhizobium ...
WP_011384890  76 ----LAEEYRRAVDGDAAM--IEHASQLLHAFRRDSVRDY----CADWADLMEYCRYSAAPVGRFLLDLSGESH-DTFAP 144 Magnetospirillu...
WP_011463850 167 SDDICTALQLINFWQDPSRDLP-R-GR-NYFVTDDCERFGVALADL----QTCQQTQ-SVTNLIAAYAAAARARMLKGSE 238 Albidiferax fer...
WP_015895982 178 SDYTCTALQLANFWQDVAVDYK-K-GR-IYLPQDDMERYGVTEAMI----AAGEATP-EFRELLRYEVGYAHKLFGKGEP 249 Acidobacterium ...
WP_011683035 177 SDATCTALQLANFWQDVTVDLL-K-DR-VYLPLALLEKHGCTVEQV----FNRQFTP-GFAAAMREAVEKARGLFHAGLP 248 Candidatus Soli...
WP_011712004 163 ADAICTALQLTNHWQDLGEDPW-N-GRpLYLPREEMARFGVKEADI----LQRRFSA-AAAELMMHLIAQTRALYLQGEP 235 Magnetococcus m...
WP_010035789 171 SDEVCTGLQLANFWQDVARDLD-I-GR-VYLPAEDRARFGYSDEDL----DARRCTP-QFLELMRFEVSRARGYFARGAA 242 Gemmata obscuri...
WP_014500508 155 NDALCTALQVINHLQDCGKDYRmM-NR-IYIPSDIMEAVGATAGDL----GRFHASL-PLRQAIETAALKTKSLLKRSSG 227 Zymomonas mobilis
WP_011602623 168 SDKVCTALQLAEHWQDVAEDLA-A-GR-IYLPREDLDTFGVTEDDL----RAKAASP-AVRHLMAFEVSRARTVMDQGAP 239 Frankia alni
WP_011122225 154 SDEICTALQLVNFWQDVSRDRL-I-GR-VYLPQSIMHRFGFEEETIrrglDSGQTTPsEVREAIKFLCERTRERFHRGVP 230 Rhodopirellula ...
WP_011085785 174 SDALCAALQINNHLQDCGKDFR-ElNR-VYLPRDALAASGASVEQL----GLAQSPP-AMLACLQSLAVRNEALLDEGRS 246 Bradyrhizobium ...
WP_011384890 145 SDALCAALQVLNHVQDCGKDYH-ElKR-VYIPRDWLAAQGLSIEVL----AGTSSPA-ALRHVLDQMLDATDGLITLAQP 217 Magnetospirillu...
WP_011463850 239 LVHLI-AGRAGWELRLVVQGGLRILDKIDALHFATLRQRPRLRWWDAPILLWRALW 293 Albidiferax ferrireducens
WP_015895982 250 LTGMV-DAELALDLDLFTRGGLEILRAIEAQGYDVLRARPSIPRSRklllllsals 304 Acidobacterium capsulatum
WP_011683035 249 LTRMV-DRRLAIDLDLFSRGGMRVLEKIEQQGYDVLRARPAVSKVERVALLVASVA 303 Candidatus Solibacter usitatus
WP_011712004 236 LLTKV-SWPLNLELGATWAGGMAVLERIEQLGGNTLRERPSLDKRAKMGCLLRGLg 290 Magnetococcus marinus
WP_010035789 243 LLPLL-PRAARVDVDLFIRGGEAILDAIERQGYDVWARRPEVSKVAKAKLLLGAAV 297 Gemmata obscuriglobus
WP_014500508 228 FSAAIhDKRLGVEVAVIQRLAESLTECLTK--HDPLSERVHHNKAETLGLAFVAAA 281 Zymomonas mobilis
WP_011602623 240 LVATV-PGRLRLALAGFVGGGRAALDAIRRADYDVLGGPPKAPKPRMARFALVALA 294 Frankia alni
WP_011122225 231 LVDLV-PGWLSADLKLFVEGGLATVDAIEAIDFDVLRVRPVVRRSTQLRLLGQAMW 285 Rhodopirellula baltica
WP_011085785 247 LTAEIrDFRLGIDVAVIQAYADRIVRLLKV--RDPLRERVHLNKFELLTFSLAGMI 300 Bradyrhizobium diazoefficiens
WP_011384890 218 LAGRVkDLRMRLQSAITVRVAERLSAKLRR--GDPLAGRVKLGKLDYAGVFLVGLW 271 Magnetospirillum magneticum
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