5OLM,6FGA,6S53,7BBD,6S53


Conserved Protein Domain Family
RING-HC_TRIM21_C-IV

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cd16596: RING-HC_TRIM21_C-IV 
Click on image for an interactive view with Cn3D
RING finger, HC subclass, found in tripartite motif-containing protein TRIM21 and similar proteins
TRIM21, also known as 52 kDa Ro protein, 52 kDa ribonucleoprotein autoantigen Ro/SS-A, Ro(SS-A), RING finger protein 81 (RNF81), or Sjoegren syndrome type A antigen (SS-A), is a ubiquitously expressed E3 ubiquitin-protein ligase and a high affinity antibody receptor uniquely expressed in the cytosol of mammalian cells. As a cytosolic Fc receptor, TRIM21 binds the Fc of virus-associated antibodies and targets the complex in the cytosol for proteasomal degradation in a process known as antibody-dependent intracellular neutralization (ADIN), and provides an intracellular immune response to protect host defense against pathogen infection. It shows remarkably broad isotype specificity as it does not only bind IgG, but also IgM and IgA. Moreover, TRIM21 promotes the cytosolic DNA sensor cGAS and the cytosolic RNA sensor RIG-I sensing of viral genomes during infection by antibody-opsonized virus. It stimulates inflammatory signaling and activates innate transcription factors, such as nuclear factor-kappaB (NF-kappaB). TRIM21 also plays an essential role in p62-regulated redox homeostasis, suggesting it may be a viable target for treating pathological conditions resulting from oxidative damage. Furthermore, TRIM21 may have implications for various autoimmune diseases associated with uncontrolled antiviral signaling through the regulation of Nmi-IFI35 complex-mediated inhibition of innate antiviral response. TRIM21 belongs to the C-IV subclass of the TRIM (tripartite motif) family of proteins that are defined by their N-terminal RBCC (RING, Bbox, and coiled coil) domains, including three consecutive zinc-binding domains, a C3HC4-type RING-HC finger, Bbox1 and Bbox2, and a coiled coil region, as well as a B30.2/SPRY (SplA and ryanodine receptor) domain positioned C-terminal to the RBCC domain.
Statistics
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PSSM-Id: 438258
Aligned: 9 rows
Threshold Bit Score: 126.167
Created: 19-Apr-2016
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:5OLM; Homo sapiens TRIM21 binds two Zn2+ ions
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #  #           # #  #  #           #  #                           
5OLM_A         8 ARLTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGsVCPVCRQRFLLKNLRPNRQLANMVNNLKEISQ 84  human
Q62191         9 MSLEKMWEEVTCSICLDPMVEPMSIECGHCFCKECIFEVGKNGGsSCPECRQQFLLRNLRPNRHIANMVENLKQIAQ 85  house mouse
Q7YRV4         5 VPLTMMWEEVTCSICLDPMVEPMSIECGHSFCQECISEVGKEGGsVCPVCRRHFLLQNLRPNRQVANMVDNLRKISQ 81  cattle
P19474         5 ARLTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGsVCPVCRQRFLLKNLRPNRQLANMVNNLKEISQ 81  human
6FGA_A         8 ARLTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGsVCPVCRQRFLLKNLRPNRQLANMVNNLKEISQ 84  human
6S53_A         5 ARLTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGsVCPVCRQRFLLKNLRPNRQLANMVNNLKEISQ 81  human
7BBD_B        84 ARLTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGsVCPVCRQRFLLKNLRPNRQLANMVNNLKEISQ 160 human
6S53_B         5 ARLTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGsVCPVCRQRFLLKNLRPNRQLANMVNNLKEISQ 81  human
XP_006885772  22 GAMERMSEEVTCPICSNLMVEPVSTECGHNFCKECIFQVGRDRDsACPVCQRPFLLSNLQPNEELASKVDNLTQKGQ 98  Cape elephant shrew

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