Conserved Protein Domain Family
SNARE_SNAP29N

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cd15887: SNARE_SNAP29N 
N-terminal SNARE motif of SNAP29
N-terminal SNARE motif of SNAP29, a member of the Qb/Qc subfamily of SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) proteins. SNAP29 interacts with STX17 (Qa) and the lysosomal R-SNARE VAMP8. The complex plays a role in autophagosome-lysosome fusion. Autophagosome transports cytoplasmic materials including cytoplasmic proteins, glycogen, lipids, organelles, and invading bacteria to the lysosome for degradation. Qb/Qc SNAREs consist of 2 coiled-coil helices (called SNARE motifs, one belonging to the Qb subgroup and one belonging to the Qc subgroup), which mediate the interactions with other SNARE proteins, and a transmembrane domain. In general, the SNARE complex mediates membrane fusion, important for trafficking of newly synthesized proteins, recycling of pre-existing proteins and organelle formation. SNARE proteins are classified into four groups, Qa-, Qb-, Qc- and R-SNAREs, depending on whether the residue in the hydrophilic center layer of the four-helical bundle is a glutamine (Q) or arginine (R). Qa-, as well as Qb- and Qc-SNAREs, are localized to target organelle membranes, while R-SNARE is localized to vesicle membranes. They form unique complexes consisting of one member of each subgroup, that mediate fusion between a specific type of vesicles and their target organelle. Their SNARE motifs form twisted and parallel heterotetrameric helix bundles. Other members of the Qb/Qc SNAREs are SNAP23, SNAP25, SNAP47 and SEC9.
Statistics
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PSSM-Id: 277240
Aligned: 24 rows
Threshold Bit Score: 86.5554
Created: 4-Apr-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
heterotetramerzero layer
Feature 1:heterotetramer interface [polypeptide binding site]
Evidence:
  • Comment:based on homology to other members of the family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  ###### ###### ##  ## ###### ## ### ###### ## ### ## ### ## #
NP_001080076  48 QEVMKKAQSMVDSSNRSLSLVYNSEKIGVDTAEELVRQGEALKRTEKMVDNMEQDMKTSQKHINS 112 African clawed frog
NP_523831     72 EKRRAIEQRTLDSTNKSLGLLYETQEVGKATAVELAKQREQLEKTSHQLDEISSTLRFSQRHLTG 136 fruit fly
EFX83969      74 LEKQKIEERTLQASGRAKGMLYETEQIGISTAEDLVRQREQLERTGSRLDDMNNSLRTSERHIQN 138 common water flea
NP_498940     41 REIEKTLQESLDSTERSRRHLENSEKIGTSTAQQLLEQREKLENTEKNLDEIHRTTQMTQRNLNS 105 nematode
XP_003378642  40 QQIEAALQSSLASTGRSLKALQESEDIGFATAQDLIVQGEKLHKVDKKLGDIQSTTKQTQRHLNS 104 Trichinella spiralis
GAA57635      43 SQLSDSKARTQASQQRALASIASSERIGVETAAELLNQGEKLSHAERRLDDISQLQKDSQRQINT 107 Clonorchis sinensis
EDS35912     172 QRRRELEESTLLTSQRCLGVLRETEQVGIATAEELHRQREQLEKTKKQLDEINNSLRFSQKHLNS 236 southern house mosquito
CCD60751      40 CQISDSQSRTKASQQRALSSIYNSEQIGVAAAQELIEQGEKLNRAEQKLEEISELQKDSQKKINT 104 Schistosoma mansoni
EKC28544      29 EQIFASEDRQLDSTMRALRSIQESESMGVATAEELLRQGEQLNNIERKTDEINQTMTVTQKHLNN 93  Pacific oyster
XP_003739370  51 EERREVEDRMLQSSSSAVRALYETEQIGIETADELVRQGEQLKKVDRNLDDIHNVTKTTQKHLTA 115 western predatory mite

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