Conserved Protein Domain Family
SP24

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pfam16504: SP24 (this model, PSSM-Id:406816 is obsolete and has been replaced by 465148)
Putative virion membrane protein of plant and insect virus
SP24, or structural protein of 24kD, is a family of putative virion membrane proteins of plant and insect viruses. These viruses are ssRNA positive-strand viruses, with no DNA stage. The family corresponds to the central region of the ORF3 of insect chroparaviruses and negeviruses and plant cileviruses, higreviruses and blunerviruses. It contains four transmembrane regions. Chronic bee paralysis virus (CBPV) is one of the more common member virions. SP24 is probably one of the major structural components of the virions.
Statistics
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PSSM-Id: 406816
Aligned: 46 rows
Threshold Bit Score: 57.6325
Created: 22-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_009342334  52 LKDAI---ILCYYNLTTSPTLLSVYIFVWVISTAEILNIKKGPLEQWLDYLMTnka---twtLGVWINSLQLWIIRICIA 125 Wuhan heteropte...
YP_009337717  27 IISDV---LGAYKRLPMYPFPMFVLMLTLIVGLAEIYNGGEKPLEYLLNGIQAdlnneniptWEKTALKICKYVLEFIIA 103 Hubei virga-lik...
YP_009337660  20 FLDSL---LVVLLRVVAHPVSLVLAVFLVLFVAAEVLE-TTGPLESLDKLIKQelgskdinsLEKFLLKGFDKCIVFVIL 95  Hubei virga-lik...
APG77683       1 MVSTLfviKSVVKQLIANPLYLLSFSIWILFVIAEFEIIETHPIDWLDNTVNE----------TTSAGATVLRVNNFIEQ 70  Hubei virga-lik...
APG77525      12 FFDDL---LKVFLRVFANPVTLILFVVGTLEFISLLTESKRNVYEFLIQNFQEllad-nppkFLISVINSFINLFKYFLI 87  Hubei virga-lik...
ASA47363      22 IFTGL---FEGYYRIIRNPLALSFFIIGILGVFTLQNATD-GPLELIIKIIKEfdek-khseFLASIVKILIKLSDFLLK 96  Aedes camptorhy...
YP_009345040  38 FFSSV---FNSFYNIIYHFWGLTFAVLGIFTLLSEYGTAS-GPLEVLLQAILKfisdpdvpiVLKSIASAFAWLLGYMVK 113 Xingshan nemato...
APG77853      38 FFSSV---FNSFYNIIYHFWGLLLAIFGVLTLLSEYGTTT-GPLEMLLKAIMKflsdpdvpvVFKSVASALAWLLGYLIK 113 Xingshan nemato...
APG77742      46 FFASV---LNSFYNLIYHFWGMVFAILGFSILLSEYGTTS-GPLEMILKALMNiindvhapvVLRSLATFLAWFFAILVR 121 Shayang virga-l...
ASA47513      36 FFQAT---LSCYANIVYHPIAMYMLALAIMFALSEHHGTD-GPLEVIKNIFVKfadddkepdALRKIAKYMITVFTHLIT 111 Culex negev-lik...
YP_009342334 126 NKFAFLCLVNFSLPYLYK--PSNKNLl-FTLGFSFLGTFMLAKTPLEIVVMGQMWFLYTQMRSPAQRF-LITGVAAVTFi 201 Wuhan heteropte...
YP_009337717 104 HKIKVFGFLMISIPVIIR--PSKNNVy-IWVLLVAILIMMRNWGFFEYIVIGNLFYIYTQLLSLTNKF-LIAMLIVVVV- 178 Hubei virga-lik...
YP_009337660  96 YKTKVVATLAYSIFVALN--PTKLRWs-VFGAAVLIVVAIPSLPVFYHIITAVALVFYLALQRIEHK-----ALTVFIY- 166 Hubei virga-lik...
APG77683      71 NIHKFIICTGLFMNIYFSkqSGKIVLinWILILFLFLIKLNLKIYIRGITFIIGEFFYCSIRSEEYKFyIILIVALIIY- 149 Hubei virga-lik...
APG77525      88 HRRFFLPVYFILIPLILQ----EREFl-TSLCLLLVITVFRSLSVLQIFCICIVWISYNSF-SQYHRFvLVFLICLFLY- 160 Hubei virga-lik...
ASA47363      97 YKEEFYLILLLLPIPIIY----TGNSvaFTTLFLIVFTFIYHKHVGTVALVIQSVFLYYSLDNLVNK--VITIFVFVYL- 169 Aedes camptorhy...
YP_009345040 114 YKYVVAYSAILFVPAIVK--PSTRNI--MFSFLLIFMAFLHYITILQVLLLSLLFYLFVMLRTPAHKF-FVLFMALIVF- 187 Xingshan nemato...
APG77853     114 YKYMVAYSAILFVPAIVK--PSTRNI--LFSGLLVFLAFLHYITILQVLLLALLFYLFVMLRTPAHKF-FILFLVIMVF- 187 Xingshan nemato...
APG77742     122 YKYLMAYVMLLSVPVLVK--PSGRNF--GFAVVIMALAILHYITFLQVMILALLFYLFVMLRTPAHKF-FIVAAVVAVF- 195 Shayang virga-l...
ASA47513     112 YKDKYATLIFISVAPIAK--PSTRNI--IFASLITISLILGSFTLLEMFIFSQLFYLHVMYRNPTYKLlAVFAMVGLFF- 186 Culex negev-lik...
YP_009342334 202 lpstgILEY 210 Wuhan heteroptera virus 1
YP_009337717 179 -----LWNF 182 Hubei virga-like virus 17
YP_009337660 167 -----VAGM 170 Hubei virga-like virus 21
APG77683     150 -----FEGE 153 Hubei virga-like virus 12
APG77525     161 -----FDMF 164 Hubei virga-like virus 16
ASA47363     170 -----VLGQ 173 Aedes camptorhynchus negev-like virus
YP_009345040 188 -----SVGF 191 Xingshan nematode virus 2
APG77853     188 -----GAGF 191 Xingshan nematode virus 1
APG77742     196 -----AVGL 199 Shayang virga-like virus 1
ASA47513     187 -----LDNF 190 Culex negev-like virus 1
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