6HQ1,2LSO,2RQP,1GHC


Conserved Protein Domain Family
Linker_histone

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pfam00538: Linker_histone (this model, PSSM-Id:395429 is obsolete and has been replaced by 459846)
linker histone H1 and H5 family
Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.
Statistics
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PSSM-Id: 395429
Aligned: 255 rows
Threshold Bit Score: 45.5858
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6HQ1_A         3 HPKYSDMIVAAIQAEKNr----AGSSRQSIQKYIKSHYKV-GENA-DSQIKLSIKRLVTTGVLKQT--KG-----VGASG 69 
XP_001847311 120 HPPYMIMVLDAMQDLVTderriSGVTFAKINKFVAAKTEQsEAHV-KLFCWKAIEKHIKDEILMKK--TG-----VGMNG 191 southern house ...
Q16SC0        92 SKSYDVMLLEAMNALDEnk--kSGVSIKSVMKYVQDNIKV-RENFkMHMFKKAIDKALLADLFVHT--SG-----TGMTG 161 yellow fever mo...
Q07GA2        36 pgrYSQLAVDTIRKLGEr----NGSSLAKIYSEARKVPWFdQQNG-RTYLKYSIKALLHNKTLTQT--RG-----VGANG 103 tropical clawed...
XP_005992607  50 rgRYSQLVVEIIESLASr----NGSSLAKIANEAKKVPWFdPQNG-RNYLKASMKALLNNGTLTQV--KG-----IGVNG 117 coelacanth
XP_005992608 119 rgKYSQLVVDIIENLGAk----NGSSFAKIANEAKKVPWFdPQNG-RNYLKYSVKALVFNETLVQV--KG-----TGVNG 186 coelacanth
ELK15204      44 pgKYSQLVVETIRRLGEr----NGSSLAKIYTEAKKVAWFdQQNG-RTYLKYSIKALVQNDTLLQV--KG-----TGANG 111 black flying fox
XP_002119566  50 KKPYLEMVVDTIEEIGEk----QGSSFMAISKGIVEKYSLnPEKV-KSYIKHAVVKGIKDEVLIRPkrKTgnaelKGLSG 124 vase tunicate
2LSO_A         5 pgKYSQLVVETIRRLGEr----NGSSLAKIYTEAKKVPWFdQQNG-RTYLKYSIKALVQNDTLLQV--KG-----TGANG 72 
XP_557774     65 KKTYEQMMIEAITE-NDph--rKGVSFALIKKFIKGKYQIeTEVA-AVYMKRAYEKLTTKSIVERVsgKS------GING 134 Anopheles gambi...
6HQ1_A        70 SFRLA 74 
XP_001847311 192 SVgys 196 southern house mosquito
Q16SC0       162 SIAfs 166 yellow fever mosquito
Q07GA2       104 SFRLN 108 tropical clawed frog
XP_005992607 118 SFKIN 122 coelacanth
XP_005992608 187 SFKLR 191 coelacanth
ELK15204     112 SFKLN 116 black flying fox
XP_002119566 125 RFKVN 129 vase tunicate
2LSO_A        73 SFKLN 77 
XP_557774    135 SIRLT 139 Anopheles gambiae str. PEST
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