Conserved Protein Domain Family
Ilar_coat

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pfam01787: Ilar_coat (this model, PSSM-Id:396380 is obsolete and has been replaced by 460329)
Ilarvirus coat protein
This family consists of various coat proteins from the ilarviruses part of the Bromoviridae, members include apple mosaic virus and prune dwarf virus. The ilarvirus coat protein is required to initiate replication of the viral genome in host plants. Members of the Bromoviridae have a positive stand ssRNA genome with no DNA stage in there replication.
Statistics
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PSSM-Id: 396380
Aligned: 20 rows
Threshold Bit Score: 191.04
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ABS19885   5 NAPQNKGKKKQNARTTQFAQRRAAAARGEIeTSSRNITPAr-sGGPPVPRSIRTEWELVGPSVGArliqgphneVVKGEA 83  American plum line ...
Q9YKE1    12 GGCRSCKKCHPNDALVPLRAQQRAANNPNR-NPVRVSNVVg--PVVRPKPVVKTTWTIRGPNVPPrip---kgfVAHSHR 85  Prunus necrotic rin...
Q5DQQ2    12 GSCARCKWCCGTNRPAPLMQEVARAQA----NPNKGKNPVrghPVKGGPSVRRTSWEVRGPNVEPkip---kghRVLSSR 84  Apple mosaic virus
Q5UKX3    12 PCGVVHRRGRPTQRSQNFARRGGMAPRPNTaNNLAMPTAV------------RTEWEINGPNTQVrrfp--glvTVSKGV 77  Fragaria chiloensis...
Q49S37     1 MSGKIIKSGKPTARSQSFALARKINNTTPPdGSVKKQFPG-------GNSKIISEWMLHGPNVPVknfp--gmiSRTENL 71  Prune dwarf virus
O57165    22 PSRGRGRGRGPTARSRNWAQSRANAARSRPqTLVIGTMPT---NLPTWKSFPGEQWH-----------------VVSGFS 81  Spinach latent virus
Q65299    21 PTRGRGGRRQPTARSRQWAQGQANARRSQPqALMIGSVPT---SLPTWKSFPGEQWH-----------------EVSGYS 80  Asparagus virus 2
Q8V320    21 PTRGRGGRRQPTARSRQWAQGLANVRRSQPqQLLVGSMPT---NLPTWKSFPGEQWH-----------------EVSGYS 80  Citrus variegation ...
Q66106    22 PVANARGRRRPTNRSRNWAQGQ----RSQPqRMVVGSMPI---DTITWKSFPGEQWH-----------------EFSGFS 77  Citrus leaf rugose ...
Q99HQ7    22 P--NRGGRRKPTARSRNWAVQQ----RSQPpNMVVGSMPI---NLPTWKSFPGEQWH-----------------EVSGFE 75  Tulare apple mosaic...
ABS19885  84 VASSTTAGQYFSIQISTYLEKFL--EMGVQLNSMTVLCASlQGSGIVCLTHKFTTCEA-AISTLSGLRFREGRRLGFQVL 160 American plum line ...
Q9YKE1    86 EVTTTEAVKYLSVDFTTTFPQLM--GQNLTLLTIINRMNSmSSNGWIGIVEDYRVINPeGPNALSRKGFLKDQPRGWQFE 163 Prunus necrotic rin...
Q5DQQ2    85 EVTAMVEGKFVNIDFADVFRDLL--EKDLKVYTFIIRVNSlSSNGWIGLVEDYDESNPkGPNPMDRKGFKKDQPRGWQWE 162 Apple mosaic virus
Q5UKX3    78 AIRSTGAGTYWGFAISTAFHNLM--GQRVLCDALVMRFISdHSGGVVGVVRGYNPDHPtAPNALTRRRFHKGVATGLQFL 155 Fragaria chiloensis...
Q49S37    72 TVNSTASGVYYTMKVRELFKDF---AVDTKVYGIVFRYCLdASNGVYGLIKGFNVSAPvAPNPLQRRKFTAKQASGVQIL 148 Prune dwarf virus
O57165    82 FPDRWNNGNIAYASMKTELGKIKtlHEITKVYSVMYGFIC-KSDGHAGFITGFDTNNPtGPVAPDRVKVKKNAYCAKQQV 160 Spinach latent virus
Q65299    81 FPNSWGSGTLAWLTMANELNKIKtlHDTTKVYSVMLGFTC-NYDGYAGFVEGFSTSNQiHPIAPDRIRVKKGKYGARQQV 159 Asparagus virus 2
Q8V320    81 FPDRWGSGTIAYMTLRSELSKIRtlHDTTKVYSVMIGFVC-KSDGYAGFMDGFDINNAtGPVAPDRIRVKRGKYCAKQQV 159 Citrus variegation ...
Q66106    78 FPDAWGSAKIAYASMRTELGKIKslHHTTKVYSVMYGFTC-KADGYAGFMDNFDSANAtGPVAPNRIRVKAAKYCARQLV 156 Citrus leaf rugose ...
Q99HQ7    76 FPASWISGDIAYASMRTELGKIKalHDSTKVYSVMYGFIT-KAGWLCRLKDDFDPSNAtGPNAPNRTRVKAGKYSAKQLV 154 Tulare apple mosaic...
ABS19885 161 PSSDTVAGDVASNVRLVFKFDKA--FEANAPLIERKVWVSTSRLPEIMIPANLLVPDE 216 American plum line pattern virus
Q9YKE1   164 PPSDLDFDTFARTHRIVIEFKTE--VPAGAKVLVRDLYVVVSDLPRVQIPTDVLLVDE 219 Prunus necrotic ringspot virus
Q5DQQ2   163 APPNTTFDDFVRKFRLVLEFKTN--FAAGAKVFMRDLYVITSELPPVQIPTNALLIDE 218 Apple mosaic virus
Q5UKX3   156 APTNQVVDEIADDIYIVFQFDTA--FTANAVLLTRDRYLQHNAVPRVEIPADVLRTEA 211 Fragaria chiloensis latent virus
Q49S37   149 APTGMTVGDIPDDLWFVIKYDNA--FQPDVPVWFCTQYLQHSMPKRVEISDSVLYAER 204 Prune dwarf virus
O57165   161 FPAGTTVSELKNDWSFIWEFDAApvVGTEKQVTVTQFWVSTTPLPGVKPPSNFLVCED 218 Spinach latent virus
Q65299   160 FPTGTTVSEVRSNWTFVWNFDAAppTGSKDAITVTKFYIATSPLPGVKPPSNFLVVEE 217 Asparagus virus 2
Q8V320   160 FPTGTTVSEVKANWNLVWDFDTApaTGAVHEISITKFYVSTTPLPGVKPPSNFLVVEE 217 Citrus variegation virus
Q66106   157 LPPGSTVADLRDNYNFVWEFDAApaAGTANIISVTKFYVSTVPLPGIKPPPNFLVCEM 214 Citrus leaf rugose virus
Q99HQ7   155 FPPGTTVAEVKSAYNFVWQFDSApaSGTANVVKVVKFYVSTTPLPGVKPPANFLVCEE 212 Tulare apple mosaic virus
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