5J09


Conserved Protein Domain Family
Circo_capsid

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pfam02443: Circo_capsid 
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Circovirus capsid protein
Circoviruses are small circular single stranded viruses. This family is the capsid protein from viruses such as porcine circovirus and beak and feather disease virus. These proteins are about 220 amino acids long.
Statistics
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PSSM-Id: 308191
Aligned: 13 rows
Threshold Bit Score: 234.607
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5J09_A    53 STNrIYTLRLTRQFQFKIN-KQTTSVGNLIFNADYITFALDDFL-QAv------------------------PNPHTLNF 106
Q9DXF4    37 TTNrLYTIRLKREFKFDIN-KQTTQTGQIIWNSDYVTFALSDFL-TA-------------------------PNPTGWPF 89  Beak and feather di...
Q5Y4T0    40 rkNgIFNTRLSRTIGYTVK---ATTVRTPSWNVDMMRFNINDFLpPGg-----------------------gSNPLTVPF 93  Porcine circovirus 2
Q27W03    42 rkTgIFNSRLSTEFVLTIK----GGYSQPSWNVNYLKFNIGQFLpPSg-----------------------gTNPLPLPF 94  Porcine circovirus 1
Q3HUU1    38 KYT-IFNVKQTQNISFTFF--GTGSPEKNKWQAMSLEAVQSSGTsPKpginlrfav--------fgdrlpgtGNQYHYPF 106 Goose circovirus
Q1L2D2    38 RANrVYYFRLRHSVKVTLQ-KDEG--GSFKYGTDVFTFTLEDVLnPTg------------------------GDSLKLPF 90  Starling circovirus
Q06J73    45 RTNrIYRIKLVRQYQQILG-KAENA-GAFRFGTDGVTIILKDFF-PEg------------------------K---ELPF 94  Finch circovirus
Q8QME6    41 RTNrVYRFRFVREFGQVLQ-KGTGG-SQLSFGTDGINIILDDFL-DWg------------------------TINWRLPF 93  Canary circovirus
Q0H9S8    36 RTNrVYRFKFVRMYRQECA--GSGD-TTLKWATDGLNIMLDDFL-DWg------------------------TINWRLPF 87  Raven circovirus
Q9DXG0    43 STNrIYTLRLKRQFKFEIR-KQTTQPGNLIWNADYVTFTLENFL-TNt------------------------PNPSALNF 96  Beak and feather di...
Q9DXG3    43 STNrIYTLRLTRQFQFKIN-KQTTSVGNLIFNADYITFALDDFL-QAv------------------------PNPHTLNF 96  Beak and feather di...
Q69EZ5    40 TTNrIYTLRFKRQFKFQIE-KQTTATATMTWKSDYITFALSDFL-GNt------------------------TNPQTLNF 93  Beak and feather di...
ABN13870  36 RFS-VVTFKVTRHTVFGFFgSGTGPTATGRWQSLSLEDGAQYTDpPAqgnnicglnmrwamfgdtnsymqgnKPQYHYPY 114
5J09_A   107 EDYRIKLAKMEMRPTGGHYTvQSDGFGHTAVIQDSRITRfKTTADQTQDPLAPFDGAKKWFVSRGF-KRLLRPKPq--iT 183
Q9DXF4    90 EDYRIKLAKMEMKPTWGHSYtNSEGFGHTAVIQDSRISKfKTTADQTQDPLAPFDGARKWYLNKGF-KRLLRPKPq--iT 166 Beak and feather di...
Q5Y4T0    94 EYYRIRKVKVEFWPCSPITQ-GDRGVGSTAVILDDNFV--TKANALTYDPYVNYSSRHTIPQPFPYhSRYFTPKPvldrT 170 Porcine circovirus 2
Q27W03    95 QYYRIRKAKYEFYPRDPITS-NQRGVGSTVVILDANFV--TPSTNLAYDPYINYSSRHTIRQPFTYhSRYFTPKPeldqT 171 Porcine circovirus 1
Q3HUU1   107 DYYMIRMVKVELRPAYNPFT-RVRTQGSTYIDKEGNITTtTSGSEWNVDPYAAMSSRKTWSPHRYH-KRVFIPKP----T 180 Goose circovirus
Q1L2D2    91 EDYKIVLVKVEMRPLGENST-EWKGLGHTVPITDARLMNfVKKKGLADDPLANWDGALKWDQRKGF-KRLVRPKPq--lV 166 Starling circovirus
Q06J73    95 EDYRIRLAKVEGIPRREDWT-HWEGAGVTVPIQDQHLRDfFKKTRLTVDPLANWDGARKWTLRKGF-KRLFRPRPq--lS 170 Finch circovirus
Q8QME6    94 EDYRIRLAKVEMRPLNESWE-EWKGFGHNVPIQDNHLEDfFKKTRLDADPLANWDGARKWDLRKGF-KRLFKPRPq--lS 169 Canary circovirus
Q0H9S8    88 EDYRIRLAKFEMRPLNENWG-SWHGIGHNVPIQDNHLEDfFKKPGLETDPLANWDGARQWDLRKGF-KRLFRPRPq--iS 163 Raven circovirus
Q9DXG0    97 EDYRIKLAKMEMKPTWGHYSiATEGFGHTAVIQDSRIEKfKTRADQSQDPLAPFDGAKKWYLSRGF-KRLLRPKPq--iM 173 Beak and feather di...
Q9DXG3    97 EDYRIKLAKMEMRPTGGHYTvQSDGFGHTAVIQDSRITRfKTIADQTQDPLAPFDGAKKWFVSRGF-KRLLRPKPq--iT 173 Beak and feather di...
Q69EZ5    94 EHYRIKLAKMEMRPTYGFGSiTQEGFGHTAVIQDSRISKfKTTADQNQDPLAPFDGARKWYLSRGF-KRLLRPKPq--iT 170 Beak and feather di...
ABN13870 115 DYYIIKGVAVTLRPAYNIYQ-KSKTQGSTIIDKDGQIVR-TSTTGWAIDPYGSTSSRRTWDPSRIH-RRYFVPKP----T 187
5J09_A   184 IEDLTTA-NQSAALWLNSARTGWIplq-----ggpNSAGTKVRHYGIAFSFPQP-EQT-----ITYVTKLTLYVQFRQFA 251
Q9DXF4   167 INDLTTV-NQSAALWLNSTRTGWIplq-----ggpNTAGTKVRHYGLAFSFPQP-QTK-----ITYECILTIYVQFRQFS 234 Beak and feather di...
Q5Y4T0   171 IDYFQPN-NKRNQLWLRLQTT------------------GNVDHVGLGTAFENS-IYD-----QDYNIRITMYVQFREFN 225 Porcine circovirus 2
Q27W03   172 IDWFHPN-NKRNQLWLHLNTH------------------TNVEHTGLGYALQNA-ATA-----QNYVVRLTIYVQFREFI 226 Porcine circovirus 1
Q3HUU1   181 IQQGGTGtNIWSTWYTPGGRQLWL-----------NSIQDNVVFYGMGMSLRQAeDTAs---pLTVEATITYYIRFGQWT 246 Goose circovirus
Q1L2D2   167 ITDLSTA-NETAALWLNSQKAFWIplqlna----aqikpKKVKHYGIAFSYLQPsPDE-----WAYQANITFYMKFRQFA 236 Starling circovirus
Q06J73   171 VTDTDTA-NTTAALWLNNPRGAWIplmkkgettasTTSGTRVNHYGLAFSFPEPwPAD-----FEMQIKATIYVEFRQLN 244 Finch circovirus
Q8QME6   170 VTDTDAA-NVTAALWLNNPKSLWIpimkks-dqnlpSSGTRVKHYGLAFSWPEPtPNQ-----MDYQVKVTIYCEFRQMN 242 Canary circovirus
Q0H9S8   164 ITDTDAG-NVTAALWLTNPRSAWIplmkkg-dqnlpSSGSRVKHYGLAISWPQP-HDA-----ILFHAKVTIYVEFRQMN 235 Raven circovirus
Q9DXG0   174 MNDLSTA-NQSAALWLNSVRTGWIplq-----ggpNAAGSKVKHYGLAFSFAQP-EIP-----IPYVCQLTIYVQFRQFA 241 Beak and feather di...
Q9DXG3   174 IEDLTTA-NQSAALWLNSARTGWIplq-----ggpNSAGAKVRHYGIAFSFPQP-EQT-----ITYVTKLTLYVQFRQFA 241 Beak and feather di...
Q69EZ5   171 LTDLTTA-NQSAALWLNSARTGWIplq-----ggpNAAGAKVRHYGIAFSFPQP-DKP-----IPYICMLTLYVQFRQFA 238 Beak and feather di...
ABN13870 188 IQGAGQG-STYSTFFLGGKNFTWI-----------NCSQDQVVHYGMGMSLRKPdNATgdegkYDIEAQFTFYIKFGQFT 255
5J09_A   252 P 252
Q9DXF4   235 P 235 Beak and feather disease virus
Q5Y4T0   226 L 226 Porcine circovirus 2
Q27W03   227 L 227 Porcine circovirus 1
Q3HUU1   247 G 247 Goose circovirus
Q1L2D2   237 W 237 Starling circovirus
Q06J73   245 M 245 Finch circovirus
Q8QME6   243 L 243 Canary circovirus
Q0H9S8   236 L 236 Raven circovirus
Q9DXG0   242 P 242 Beak and feather disease virus
Q9DXG3   242 P 242 Beak and feather disease virus
Q69EZ5   239 P 239 Beak and feather disease virus
ABN13870 256 G 256
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