Conserved Protein Domain Family
Corona_nucleoca

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pfam00937: Corona_nucleoca (this model, PSSM-Id:395751 is obsolete and has been replaced by 460005)
Coronavirus nucleocapsid protein
Statistics
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PSSM-Id: 395751
Aligned: 41 rows
Threshold Bit Score: 292.678
Created: 22-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q07499         6 FQDRGRKRVPLSLYAPLRVTNDkPLSKVLANNAVPTNKG-NKDQQIGYWNEQIR-WRMRRGERIEQPSNWHFYYLGTGPH 83  Porcine epidemi...
YP_005352875   1 MAVPSVPKADCSWFQIIKAQNKkVQPLAFKGDGVPINTTlPKEMCHGYWLRYKR-VKPGGA---PLPPSYSFYYTGTGPR 76  Wigeon coronavi...
AFD29230       1 MAVPRVPRADASWFQPIKAQNKkITAPSFKKNGVPVNASlQAADQHGYWLRYNR-TKSGGG---SIPAAFSFYYTGTGPY 76  Night heron cor...
AFD29248       1 MATPTVPVADASWFQPLKAQNKkNTTPSFKGDGVPINTSlDHKAAHGYWLRFNR-QKPGGA---QLPPSFAFYYTGTGPR 76  Common moorhen ...
ACJ12039       1 MSAPVVPTTDASWFQVLKAQNKkATHPKFKGDGVPINSAiKPAENHGYWLRYNR-QKPGGT---QIPPSYAFYYTGTGPR 76  Bulbul coronavi...
YP_005352850   1 MATPSVPTTDASWFQVLKAQNKkATHPQFRGNGVPLNSAiKPAENHGYWLRYTR-QKPGGT---QIPPSYAFYYTGTGPR 76  Sparrow coronav...
YP_005352842   1 MTAPTVPTVDASWFQVLKAQNKkAIHPQFRGDGVPINSAiKAQENHGYWLRYNR-QKPGGA---AIPPSYAFYYTGTGPR 76  White-eye coron...
ALQ43524      23 KPPKVGSSGNASWFQPIKAKKLnSPQPKFEGSGVPENDNlKSSQQHGYWRRQHR-FKPSKGGRKPVPDAWYFYYTGTGPA 101 European turkey...
AGX27807      31 PKPRPAPNVSVSWYTGITQHGK-QPLAFPAGQGVPLNANsTPKQNAGYWRRQDRkLNTGNG-VKQLAPRWYFYYTGTGPE 108 Betacoronavirus...
AIA62285      40 RRPQGLPNNTASWFTALTQHGK-EGLKFPQGQGVPINTNsGRDDQIGYYRRATRrVRGGDGKMKELSPRWYFYYLGTGPE 118 BtRf-BetaCoV/JL...
Q07499        84 GDLRYRTRT--------EGVFWVAKEGAKTEPTN-LGVRKA---SEKPIIPKFSQQ--LPSVV---EIV-EPNtppasra 145 Porcine epidemi...
YP_005352875  77 ATLKYGELQdsdnqdnvNRVLWVKSPDADTSIKPkVAKRNPd--KHPLLPLRFKPGdgPVQGF----------------- 137 Wigeon coronavi...
AFD29230      77 ATLKFGETPs-------DRITWVKGPSAVTTNKPkVAKRDPd--KHPLLPLTFPPGdgVNTGL----------------- 130 Night heron cor...
AFD29248      77 GNLKYGEFPpnes-kgnSRITWVHVKDADTSIKPkVAKRNPqnpKHALLPLRFPPGdgPAQGF----------------- 138 Common moorhen ...
ACJ12039      77 GNLKYGEYPpndn-ietSRITWVKAKGADTSVKPkVAKRNPsnpKHNLLPLRFPAGdgPAQGF----------------- 138 Bulbul coronavi...
YP_005352850  77 GNLKYGELPpndt-qatTRVTWVKGPGADTSIKPhVAKRNPnnpKHQLLPLRFPTGdgPAQGF----------------- 138 Sparrow coronav...
YP_005352842  77 GNLKYGEFPpnds-kdsSRITWVKAKGANTDIKPhVAKRNPnnpKHALLPLRFPPGdgPAAGF----------------- 138 White-eye coron...
ALQ43524     102 ADLNWGDSQ--------DGIVWVAAKGADINSRSnQGTRDPd--KFEQYPLRFSDGg-PDGNFrwdFIPlNRG------- 163 European turkey...
AGX27807     109 ANLPFRTVK--------DGIYWVWEEGASEAPSD-FGTRNPa--NDAAIVTQFAPGtqLPKNC---HIE-GTGgnsq--s 171 Betacoronavirus...
AIA62285     119 ASLPYGANK--------EGIVWVATEGALNTPKDhIGTRNPn--NNAAIVLQLPQGttLPKGF---YAE-GSRs------ 178 BtRf-BetaCoV/JL...
Q07499       146 nsRSRSRGNGNNRSRSPSNNRGNNQSRGNSQNRGNNQgrgasqnrggnnnnnnksrnqsnnrnqsndrggvtsRDDLVAA 225 Porcine epidemi...
YP_005352875 138 --RIDPF-----QSRGR------SVERGQQDRRAQSA------------------------------------------- 161 Wigeon coronavi...
AFD29230     131 --RVDPF-QNRGRTMDR-----GPNQRSSSAPVDSGN------------------------------------------- 159 Night heron cor...
AFD29248     139 --RIDPFQPQRGRGMER-----GPTQRSQSANPRQND------------------------------------------- 168 Common moorhen ...
ACJ12039     139 --RVDPFN-SRGRTLQR-----GSNTRSMSVDARPNN------------------------------------------- 167 Bulbul coronavi...
YP_005352850 139 --RVDPFN-ARGRPQER-----GSGPRSQSANPRGTN------------------------------------------- 167 Sparrow coronav...
YP_005352842 139 --RVDPFN-SRGRTMDR-----SNGPRSMSADPRSQT------------------------------------------- 167 White-eye coron...
ALQ43524     164 --RSGRSTAASSAASSR------APSREGSRGRRSGA----------------------------------------EDD 195 European turkey...
AGX27807     172 ssRASSASRNSSRSNSR---GSQPGSRSHSPGSVGPS-------------------------------------DASALL 211 Betacoronavirus...
AIA62285     179 --GSQASSRSSSRSRGNSRISTPGSSRGNSPARVASGg----------------------------------gETALALL 222 BtRf-BetaCoV/JL...
Q07499       226 VKDALKSLGIGENPDRhkqqqkpkqeksdnsGKNTPKKNKSRATSKER-DLKDIPEWRRIPKGENSVAACFGPRGGFK-- 302 Porcine epidemi...
YP_005352875 162 -------------------------------EPQRPKQRERSRSAPSRaAPKQHAIPKRVLLKGKTISGTFGKRSPAKa- 209 Wigeon coronavi...
AFD29230     160 ---------------------------------RNQRARSKSAPSRTN--PKTHQIPKRTLTKGKTISQVFGKRTPGGa- 203 Night heron cor...
AFD29248     169 ---------------------------------AGNRRRAASAPGTNRsKTHTHAIPKRTLQKGKTISAVFGKRSPAGs- 214 Common moorhen ...
ACJ12039     168 --------------------------------SNQPKKRDQSAPAAVR-RKTQHSAPKRTLAKGKTITQVFGPRSPTGa- 213 Bulbul coronavi...
YP_005352850 168 ---------------------------------NQPRKRDQSAPAAVR-RKTQHQAPKRTLPKGKTISQVFGNRSRTGa- 212 Sparrow coronav...
YP_005352842 168 ---------------------------------NQPRRRDQSAPAAVR-RKTQHQAPKRTLQKGKTISQVFGNRSRTGa- 212 White-eye coron...
ALQ43524     196 LIARAAKIIQDQQKKG--------------------ARITKAKADEMA----HRRYCKRTIPPGYKVDQVFGPRTKGKe- 250 European turkey...
AGX27807     212 YLELAKRLEALEAGKS----------------KSAPKVITKKDAADAK----KKMRHKRVATKAYNPTQAFGLRGPGDlq 271 Betacoronavirus...
AIA62285     223 LLDRLNQLESKVSGKG---------------QQQQGQTVTKKSASEAS----KKPRQKRTATKQYNVTQAFGRRGPDQtq 283 BtRf-BetaCoV/JL...
Q07499       303 -NFGDAEFVEKGVDASGYAQIASLAPNVAALLFGGNVAVRELAD-SY------EITYNYKMTVPKSDPNVELLVSQVDAF 374 Porcine epidemi...
YP_005352875 210 -NVGSPDTEKTGLGDPRLMALMRFVPGTQELLFAGHLKHKMQPE-GV------QLTFTYDITVKRDNKDFDRIVEALNSV 281 Wigeon coronavi...
AFD29230     204 -NVGSADTEKAGFTDPRLMCLMRHTPGTQELLLAGHLDHDIQPE-GV------YLKFTYTTQVKRDSAEYDRVIAALNNV 275 Night heron cor...
AFD29248     215 -NVGSADTEKAGMADGRIMALARQVPGVQEMLFAGHLSHQFQAD-AV------TLTWTYSITIKSDSSDYDRIKQALDTV 286 Common moorhen ...
ACJ12039     214 -NVGAPDIEKTGMADPRVMALSRHAPGVQELMFAGHVSSNFQANgDI------TLTFTYSITVKEGTPDYQRVKDALNTI 286 Bulbul coronavi...
YP_005352850 213 -NVGSADTEKTGMADPRIMALARHVPGVQEMLFAGHLESNFQAG-AI------TLTFSYSITVKEGSPDYERLKDALNTV 284 Sparrow coronav...
YP_005352842 213 -NVGSADTEKTGMADSRIMALARYVPGVQEMLFAGHVDGQFQAG-DI------TLTFTYSITVKDGTPDHARIKDALNTV 284 White-eye coron...
ALQ43524     251 gNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSKVTPKLQPD-GL------HLKFEFTTVVPRGDPQFDNYVKICDEC 323 European turkey...
AGX27807     272 gNFGDLKYCKEGVDDPRWPQMAELAPSASAFLSMSQLKLVHHSN-DTdnkpvyMLRYSGAIKLDPKNPNYSKWLEILEGN 350 Betacoronavirus...
AIA62285     284 gNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPS-GT------WLTYHGAIKLDDKDPQFKDNVILLNKH 356 BtRf-BetaCoV/JL...
Q07499       375 KTGN---------AKLQRKKEkkn---------------kreTTLQQHEEAIYDD 405 Porcine epidemic diarrhea virus CV777
YP_005352875 282 VDMVyepegeirkDQQSKKDTqpk---------------kkaEKKTPTNPQKQPD 321 Wigeon coronavirus HKU20
AFD29230     276 VNQK---------YDADNLPSqkpk--------------stkPKPKKEKKERAPP 307 Night heron coronavirus HKU19
AFD29248     287 VDQT---------YEAPIKEKkqpak-----------qqpkqDKPKPQRSPKKQD 321 Common moorhen coronavirus HKU21
ACJ12039     287 VDQK---------YEAPSKPQkqskp------------ksepAKAKPKKKKEKPE 320 Bulbul coronavirus HKU11-934
YP_005352850 285 VNQT---------YEPPTKPTkdkkp------------ekqdQSAKPKQQKKPKK 318 Sparrow coronavirus HKU17
YP_005352842 285 VNQN---------YEPPSKPQkqkks------------sdpsTVQKPQQKKKVKK 318 White-eye coronavirus HKU16
ALQ43524     324 VDGVgt-----rpKDDEPRPKsrsss------------rpatRGSSPAPKQQRQK 361 European turkey coronavirus 080385d
AGX27807     351 IDAY---------KNFPKKEKkqkqsqikqeaedpewdstdlFSQPLQDPDNQPK 396 Betacoronavirus Erinaceus/VMC/DEU/2012
AIA62285     357 IDAY---------KTFPPTEPkkdkk-----------kktdeAQPLPQRKK-QPT 390 BtRf-BetaCoV/JL2012
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