Conserved Protein Domain Family
bCoV_NS6

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pfam12133: bCoV_NS6 
Betacoronavirus NS6 protein
This entry represents non-structural protein NS6 (also known as non-structural protein 6, accessory protein 6, or X3 protein), which is highly conserved among SARS-related coronaviruses. (This is distinct from NSP6 which is encoded on the replicase polyprotein). Proteins in this family are typically between 42 to 63 amino acids in length. NS6 is located in the endoplasmic reticulum. It has been reported that NS6 can increase the cellular gene synthesis and it can also induce apoptosis through Jun N-terminal kinase and Caspase-3 mediated stress. This protein can modulate host antiviral responses by inhibiting synthesis and signalling of IFN-beta, via NS6 interaction with host N-Myc (and STAT) interactor (Nmi) protein and suppressing the translocation of signal transducer and activator of transcription 1 (STAT1).
Statistics
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PSSM-Id: 463468
Aligned: 2 rows
Threshold Bit Score: 97.3998
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P59634    1 MFHLVDFQVTIAEILIIIMRTFRIAIWNLDVIISSIVRQLFKPLTKKNYSELDDEEPMELDY 62  Severe acute respiratory syndrome-rela...
AKZ19080  1 MFHLVDFQVTIAEILVIIMRTFRIAIWNLDMITSSIVTQLFKPLTKKKYSELDDEVPMEIDY 62 
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