1Y79,4KA8


Conserved Protein Domain Family
M3A_DCP

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cd06456: M3A_DCP 
Click on image for an interactive view with Cn3D
Peptidase family M3, dipeptidyl carboxypeptidase (DCP)
Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70). DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from Escherichia coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). OpdA may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala. This family also includes Arabidopsis thaliana organellar oligopeptidase OOP (At5g65620), which plays a role in targeting peptide degradation in mitochondria and chloroplasts; it degrades peptide substrates that are between 8 to 23 amino acid residues, and shows a weak preference for hydrophobic residues (F/L) at the P1 position.
Statistics
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PSSM-Id: 341051
Aligned: 257 rows
Threshold Bit Score: 562.848
Created: 20-Jun-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteactive site
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 3 residue positions
Conserved feature residue pattern:H H EClick to see conserved feature residue pattern help
Evidence:
  • Comment:generally in GluZincins, a zinc ion is tetrahedrally co-ordinated by three amino acid ligands and a water molecule
  • Structure:1Y79: Escherichia coli dipeptidyl carboxypeptidase (DCP) binds Zn2+
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1Y79_1        25 HHYRPAFDEGMQQKRAEIAAIAlnpq-mpdFNNTILALEQSGELLTRVTSVFFAMTAAht--------ndELQRLDEQFS 95  Escherichia coli
ELP85891      20 NHIVEDLNYTLKLTQQRIENIRsiemtqatFLNVVEPLEMATYELEDIKMLILLILNTrgn-------itEYKTEYSKVL 92  Entamoeba invad...
CDE83493       4 DCALDDVKEAISTAKSNIESIKsqk--tptYENTIRALDRATMDLNRVWTYLNHLESVad--------tdELRCAVNAAM 73  Coraliomargarit...
OCA02940      21 ERASADIREAVKQAQASIDAICsvt--eptYANTFAALESASEPLHRAWGRLMHLDSVnd--------naAQREAIAELM 90  Akkermansia sp....
OCA02939      37 EQAKIDLDHAMSQYRERVRQLEnvt--dptYENTFGELANIDENLERLCLRLEVLSSLcnetgqrdavtgITTTIQQGLD 114 Akkermansia sp....
ELP87885      21 EHVKPDIEYAISLTKRNIEAIRqvsieasnFENVVHALEMATMELDDANTLVTMMCTLrgd-------vdGYTKAQEEVL 93  Entamoeba invad...
ELP88862      20 DHIVTDVDLAFKKCTENLDQIHtrameevnFENTVVALELATLPLDDVFLKIELLSGVrnd-------mpGFEKAYDNVV 92  Entamoeba invad...
XP_649877     20 ECIVNDIEEGIKICKENIQKIKeipinqstFENTVRPFDNAIIPLKDIMYKLNILILCrsd-------ikEYSLLNEEIF 92  Entamoeba histo...
XP_001583775  21 DHVFDDGKYAIDLANKAIDEISqlpddqitYDNTFRRFDKLFAAVNTFSNRVSHLIAVke--------ttELREAYAKIL 92  Trichomonas vag...
ACD05850      48 DKLEPDIQEAMRLTRTAIEEISrlrpeemtYENTFGALEKSNDLLTEGMCKAYVLKSLcd--------sgELRKAMDSVA 119 Akkermansia muc...
Feature 1                                                                                        
1Y79_1        96 AELAELandiylngELFARVDAVWQrreslgldsesIRLVEVIHQRFVLAGAKLaqadkAKLKVLNTEAATLTSQFNQRL 175 Escherichia coli
ELP85891      93 PALSTFfaglysdsKLLLLLEHVRDnsstl--skeeYRLTEILIRKYVTGGSQLstenkAKLVHEKTTLSMLMQKFGENL 170 Entamoeba invad...
CDE83493      74 PLVSEFyssipldsGLYARVADYAKtgealslkgsgRRLLDETILDFELNGAGLsadkkKRLSQIETRLSLATQKFSENV 153 Coraliomargarit...
OCA02940      91 PEVVVFsssialnpRLWQVLKHAAAqpwvaglspakQRFIQETLADFRESGADLpedkkARYAEIETELSLATKQFSENV 170 Akkermansia sp....
OCA02939     115 DVLINE--------KIWKILKKADAcewakhltpeqNRYKEQIMDFFRKNGGDLspegkKRLVAINQELLALSSRFASNA 186 Akkermansia sp....
ELP87885      94 PMITEIksemfsdeCIFKLLSYVSEhknqe-mdhnqKRLTDFFYKKFVKGGSLLsksekTELISLQKDLSVLMQRFNSNV 172 Entamoeba invad...
ELP88862      93 GKITEYrtaifadeHLFARVEKVHLecenfhlkddeKRLTELMYNNFVQGGAGLpkdkkEQFKAFDKKISELGQTFMNNL 172 Entamoeba invad...
XP_649877     93 SKEVSFkssiytdnELFKLIEYNYKqkevl--efdqRQLIEKIYNDFIDGGILLndsqkNKFIQLKEEVFKLSKKYLSNV 170 Entamoeba histo...
XP_001583775  93 PVLSEFetsvylndKLYKVLSKEQEkskeqnlnkqeLRFIDNTIKEFQQNGAGLsedkkKRISEISVELSTLTKKFSDNV 172 Trichomonas vag...
ACD05850     120 PRVSAFlssvtkdqALWKVLKTAEErlrqthlnpeqERYMELSMQSFRDNGADLppdkrARLESIDRELTLASQRFNNLY 199 Akkermansia muc...
Feature 1                                                                                        
1Y79_1       176 LAANKs--GGLVvnDIAQLAGMSEQEIALAAEAArekg----ldnKWLIPLlnttqQPALaemrDRATREKLFIAGWTRa 249 Escherichia coli
ELP85891     171 IKSVDd-nFVAFs-SEDELIGVPANNMERFKKAAqdh-----nmpGFVVMLdansySAVMnycvVEKTRELVYRMNNKLc 243 Entamoeba invad...
CDE83493     154 LDDTKr--FFLHlkDKSELSGLPDNAVKTAAKKAaer-----nldGWVFTLeqpsfVPFMtyadSDALRERLWRASARLa 226 Coraliomargarit...
OCA02940     171 LDSTNa--WEHIvtDESELAGLPDSAREAARLNAlakgygteeapQWRFTLqfpsmSPVMqfadSDSLRKTLWEGANTIg 248 Akkermansia sp....
OCA02939     187 LDSANs--WKIVikDRSRLAGLPYSTVRYLQSRAqeqgfgdeehpQWLVTAqdgsaYSILaqgdDPKLREEIWRSLQTIg 264 Akkermansia sp....
ELP87885     173 LSDTDe-kYVTFt-NKSDLMGVPEDSIARFHDEAisr-----kseGFVVTPkapdwIPVLsycqNSTTRQKVYHMCNTIc 245 Entamoeba invad...
ELP88862     173 SKCLDr-tYVEVq-DVNELDGVPKEAIARFKKEAeer-----kmsGYAINMqapnyIAVMtyckDQKLRQKVFETYNRVc 245 Entamoeba invad...
XP_649877    171 INDTDn--YSLLieDKNKLDGIPSNILEHYFNEAqkr-----klkGYLITLqassyLPLLkyckNEEIRKEIFIQYNSLc 243 Entamoeba histo...
XP_001583775 173 LDSTKa--GEIYvtNPDDLKGLPQSAIDAAKEDAtnkg----qpdKWRFNLqypsrLPVMmhadSEELRKKMYDLNLTIg 246 Trichomonas vag...
ACD05850     200 MDARKswtWTVR--NAALLEGIDGSALQQAREEFlkrqp-gqsgpGWTFTLdsaasARVMekarREECRKDLWEHRQSLa 276 Akkermansia muc...
Feature 1                                                                                        
1Y79_1       250 ekndanDTRAIIQRLVEIRAQQATLLGFphYAAWKIADQMAKTPeAALNFMREIVPAARQRASDELASIQAVIdkqq--- 326 Escherichia coli
ELP85891     244 sy-gatDNSDLLEKILEERDVISHIFNFndFGDFIAQNRMVSSE-DALKFVEQLHDKIYKDFKAQLSYLIALKrketn-d 320 Entamoeba invad...
CDE83493     227 sd-gefSNWNLIREILSLRQEKAEILSRanFADVVLCRRMARDGkTAMKFVEDLHAKFKRPFEAEWKALLNFArsqnlad 305 Coraliomargarit...
OCA02940     249 sg-eqyDNAALIAKILDLRQEKAEMLGFanFADYTTSRRMAGTGaNALRFIDTMHEKVHPKFIEEQETVRRYKeritg-q 326 Akkermansia sp....
OCA02939     265 rg--khDNAPLISGILQLRHEKARLLGYanYAEMAADDRMVGTAsHAAEFLQTIHDSIMPAYRQEMATLRRLKrehtg-n 341 Akkermansia sp....
ELP87885     246 ss-gksDNTTVIIEILKKRQRLSELLGYkdYSDYATDGRMAKTGdNAVSFVDDLKNKVAPFFKTEIEELKNIKsvsss-d 323 Entamoeba invad...
ELP88862     246 sf-gefDNSENVISILQLREEMAHIIGFntIADFILKNRMAKNGeNAMHFVEGLHQRTQRFFDKDVQRLQETKaqvtg-- 322 Entamoeba invad...
XP_649877    244 sk-geyDNTNIINKVLEKRQEIAKLLGYsnYSEYITKRRMVKSSkNAMNFIEDLHKKILSFFKREVEEIIKYKkeqt--- 319 Entamoeba histo...
XP_001583775 247 rg-gqyDNGELVKKITALRDEKAKLLGFktWADLVLNRRMAENGsNALKFVEDLHDKCYSQYMEDNEALLKYAkskn--- 322 Trichomonas vag...
ACD05850     277 tg--tcDTEPVIREILSLRREKAHLCGYkeYPDYALRESMAENGeNAIKFVNELLDKIKAPFFREMETLRSLKarltg-q 353 Akkermansia muc...
Feature 1                                                                                        
1Y79_1       327 ggfsAQPWDWAFYAEQVRREKFdlDEAQLKPYFELNTVLNeGVFWTANQLFGIKFVERfdi---------------pvYH 391 Escherichia coli
ELP85891     321 plcvLKPWDVGYYSQKYLLQHFhyDSEEFRKYFTLSSVLE-GLFKVIRNVFQIEMKECsev---------------rgWH 384 Entamoeba invad...
CDE83493     306 sdglIPPWRVAYVSEKFRKNKYdfDPESLRDYFPMDSVLN-GLFEICRRLFGIKVSKSeld--------------claWD 370 Coraliomargarit...
OCA02940     327 paerLNPWEIGYWSEKQRKELYdfDSEELRPYYSVPNVMK-GLFDIYSTLYGIRVTERttawrepgsseplpegavevWH 405 Akkermansia sp....
OCA02939     342 aetlLDPWDVAYYGHQLYETQAddQKGKLDSYLRADHVIQ-GMFDIFSGLYGLTITERptaciasgsgktapegtvevWD 420 Akkermansia sp....
ELP87885     324 snenLKPWDVSYLIQKIKKSQYnyDDQLYRKYFTLSSVLD-GLFLTIKKLYGVSLVYNekv---------------kaWH 387 Entamoeba invad...
ELP88862     323 rqdkLKPWDISFYINIIKEQDYklDEEEFRKYFNSKNVLY-GIFQVFKKMYSVTFKQKev----------------pvWA 385 Entamoeba invad...
XP_649877    320 gnseLNPWDINFYIEQIKEKQLkyNEEEIRQYFPEPIVFK-VLFEVYKRLYGITFCYNksi---------------kgWH 383 Entamoeba histo...
XP_001583775 323 pdvvLKPWNTAYWAERQRVELYdfDEEKLKPYFPAEKVLE-GLYQIVQRIYGIDVKEVptyvrekda--pevegkvevWH 399 Trichomonas vag...
ACD05850     354 enarLNPWDVAYYANLRAEEHFrlDQEELRRHFPLPRVLD-GLFSLAERLYGIRVKEVparqslsgipagesagtvevWH 432 Akkermansia muc...
Feature 1                                                                                        
1Y79_1       392 PDVRVWEIFDhng-vgLALFYGDFFARdsKSGGAWMGNFVEQstln------kthPVIYNVCNYqkpa-agePALLLWDD 463 Escherichia coli
ELP85891     385 EDVKYYEAYDintkklLGGIFYDFFPRkgKRSGACKETLFKAfvetnsneekihsPIVYIITNIapppvgqkEAVLTLGE 464 Entamoeba invad...
CDE83493     371 SSVEMFEMRSesg-glMGYFYTDFTPRksKRAGAWMNLLSPRdae--------tpALGVIAGNLsepl-dgkPALLSYDD 440 Coraliomargarit...
OCA02940     406 PEVLFYDIHDtatgdhLGSFYADWHPRdsKRAGAWMNCLQTGlppmdg--qpripHLGLMCGNMtkpv-gaaPALLDHRE 482 Akkermansia sp....
OCA02939     421 PAVRYYEIRDtasgehIGSFYMDMNPRdnKRDGIWMQTIESGspprag--hpripRLAAICSYTgigt-ktrPTTMSPED 497 Akkermansia sp....
ELP87885     388 DDVRFYDVFDene-klIGGVFYDFFPRkgKRGGACQEIVWRDyvkkn---gtkrlPLVFVVTNItpgv-dgkEARLNHDE 462 Entamoeba invad...
ELP88862     386 DGVEYYEVYRnd--nfLGSVYFDLFPRkgKRSGGYHEIIRMPhgt--------vrPVCVVVTNLtppg-edgIAHFSHDE 454 Entamoeba invad...
XP_649877    384 QDVKYYDIIDsnn-krLGGVYFDLYSRkgKKAGGFHDVLRTNylneq---gilikPLGVVVCNFlppn-ndtISYFSHSE 458 Entamoeba histo...
XP_001583775 400 PDVKVFEVFDsnthlkFGAFYVDLYPRedKHSGGWMSELHIGhpsa------ndpNLSTLNCNLnksi-ggkPALLSHDD 472 Trichomonas vag...
ACD05850     433 PDVRFFTIDDgng-nqLGSFYLDLFSRsnKRAGAWMNTLDTGspstpe--tpgkpRLGMVCLNIhppa-agdTVILSHRE 508 Akkermansia muc...
Feature 1             #   #                         #                                            
1Y79_1       464 VITLFHEFGHTLHGLFarqryatLSGTNtp-rDFVEFPSQINEHWAThPQVFARYArHYQSGAamp-------------- 528 Escherichia coli
ELP85891     465 VKTIFHEHGHFIHTILsak-ryaAIGEDnvefDFIEFPSKLFENFCF-EETVIEMM-TQPNGEkvp-------------- 527 Entamoeba invad...
CDE83493     441 VLTLFHEFGHLIHFFAmdsseigLRNVAw---DFVELPSQIMENWCRdKTALDLFArHWKTGEkip-------------- 503 Coraliomargarit...
OCA02940     483 VETVFHEFGHLLHQLLsdvevksLAGTSva-wDFVELPSQINENWCWeRESVNLYGrHYQTGEtip-------------- 547 Akkermansia sp....
OCA02939     498 IQALFHEFGHTLHHCLsevgirdLSGTNtv-lDFVEFPSQINENWVWeREALNRFAkQRTTGRplp-------------- 562 Akkermansia sp....
ELP87885     463 VETIFHESGHMLHGIFafqpyfnLTNENva-fDFIELPSQFFENWTFeKEVINVMTwQGISQEneksevkgkvsdvieeg 541 Entamoeba invad...
ELP88862     455 VETLFHECGHLIHTLLaeakypqFTALKva-wDFVELPSQIMENWTYeKEVFDIIGrYKIDGKecgi------------- 520 Entamoeba invad...
XP_649877    459 LKTLFHESGHLMHTILskqrfasLTGMNve-wDFVELPSQIMENWIYeKEVFHLFNeVGGIKEip--------------- 522 Entamoeba histo...
XP_001583775 473 VSTIFHEFGHNLHCLFydgeissLSGMSvp-wDYVELPSQFHENYVWeREALDLFAkHWETGEkip-------------- 537 Trichomonas vag...
ACD05850     509 VRTLFHEFGHLLHLMFtrvsipsLAGTSvp-rDFVEVPSQFMENWCWrPDVLKSFArHERTGLpip-------------- 573 Akkermansia muc...
Feature 1                                                                                        
1Y79_1       529 ----------deLQQKMRNASlfnkGYEMSELLSAALLDMRWHCleenea-mqdvddFELRALVAENmdlpaippRYRSS 597 Escherichia coli
ELP85891     528 ----------knLLNRFENARncfaAVNFMAQLKLSKMDLEIHKnylksg--mhvdaFLEEKLEKYSipfd-vkfLSGIR 594 Entamoeba invad...
CDE83493     504 ----------edLYAKFKKSLkfmgANAAMRQLSFAKIDLEMHMsaakfaaaedingLALDVLKGYMhkys-vvpPVILP 572 Coraliomargarit...
OCA02940     548 ----------daLFAKMLAARnyqsATACMRQLSFGKPDLELHTrldryr-grdleeIDREILADYRmpnp-ieaPSVLR 615 Akkermansia sp....
OCA02939     563 ----------dkLYRSMLASQnflrANSIMNQCAIAHFDLEVHMnyekyk-dmpperIEREILAGYCpett-ehaPIPLY 630 Akkermansia sp....
ELP87885     542 gkkeqmrrvpdeLYNVMWSAKnfmaGYYYMRQLSFGKMDLEIHRnflksg--melddFIKEKTKDFGiefd-vpnYSIIR 618 Entamoeba invad...
ELP88862     521 --------vpdvLYDKMMKAKtfmsAYYMMRQLSFGKMDLELHLnylksg--kpidqFIKEVTKEYQidyd-vdsLSNVR 589 Entamoeba invad...
XP_649877    523 ----------qdIYNKIIQTRifmsAFYMMRQLKFSKIDLELHQhyiqsn--lplddFISLITENYDypfs-sssLSIIR 589 Entamoeba histo...
XP_001583775 538 ----------ddLFNKMIAARnyrsATFFVRQLYFGRIDFALHQeyekyk-dmdldaIDDVVADKYRsfyg-ektHTMYY 605 Trichomonas vag...
ACD05850     574 ----------eeMLNSLDASRgntpALALAGQLLYAKMDLAVHSeperfs-agslddVDSAVAGDMDyfkd-fkrAGKLR 641 Akkermansia muc...
Feature 1                                                                                        
1Y79_1       598 YFAHIFg--GGYAAGYYAYLWTQMLADDGYQWFVEqggltRENGLRFREAILSRGnseDLERLYRQWRGKAPKIMPMLQH 675 Escherichia coli
ELP85891     595 KSKHLFvgeCCYAASYFTYKWDEMMALDAFDLFVQnglfnEETSAKLKKFVLEVGcmeDANTMFRNFRGREPKCDALMIK 674 Entamoeba invad...
CDE83493     573 RFTHLFgdsVGYAAGYYSYKWAEVLDADAFTRFERegifnSATGREFAEKILRVGneiPPEKAFENFMSRGPDVSALVER 652 Coraliomargarit...
OCA02940     616 RMTHLFadsTGYAAGYYSYKWAEVLEADAFSRFLKegvlnPAVGADFRRCILSKGnskPAAELYRDFMGRDPDPDALLIK 695 Akkermansia sp....
OCA02939     631 DQTHLFv--DNYGAGYYAYLWGEMLTTDAFSKFKEkgilnPEVGAEFRRCILSKGnskPAIELYRDFMGRDPKPDAFIRK 708 Akkermansia sp....
ELP87885     619 RFEHLFteaCCYACSYYSYKYAEVIEADAFELFKEkgifdKETAMKFRKYILEPGnteDADVLYRKFRGRDPNPDALLRR 698 Entamoeba invad...
ELP88862     590 TFIHLFkqlNGYACAYYSYKWAEVLEADAFELFKEkgifnKEVCDKFRTCVLGVGnavPADVAFKNFRGREQNADALFKR 669 Entamoeba invad...
XP_649877    590 HFSHLFnltYCYASGYYSYKWAEILEADAFELFKEngifnSLISTKFKTSILEMGgskPASELFKEFRGRNPDPSALLKK 669 Entamoeba histo...
XP_001583775 606 NFSHLFsspVAYSAGYYSYKWAEVLDADCFSRFQKegifnKETGMSFRREILEKGnsiPVQEEFRNFMGRDPSQEALLKR 685 Trichomonas vag...
ACD05850     642 TARHLFsspAGYASFYFSYQWAEVLDKDIFEAFERaggqdRETAGKFRKTILEKGyavPPMRQFMDFMGRKPRMDAMLRK 721 Akkermansia muc...
Feature 1           
1Y79_1       676 RGL 678 Escherichia coli
ELP85891     675 NGF 677 Entamoeba invadens IP1
CDE83493     653 SVD 655 Coraliomargarita sp. CAG:312
OCA02940     696 TGI 698 Akkermansia sp. Pyt
OCA02939     709 LSA 711 Akkermansia sp. Pyt
ELP87885     699 DGL 701 Entamoeba invadens IP1
ELP88862     670 NGL 672 Entamoeba invadens IP1
XP_649877    670 LNL 672 Entamoeba histolytica HM-1:IMSS
XP_001583775 686 SGI 688 Trichomonas vaginalis G3
ACD05850     722 RRL 724 Akkermansia muciniphila ATCC BAA-835

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