6SSJ,1QRJ


Conserved Protein Domain Family
Gag_p24

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pfam00607: Gag_p24 (this model, PSSM-Id:395483 is obsolete and has been replaced by 459864)
gag gene protein p24 (core nucleocapsid protein)
p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.
Statistics
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PSSM-Id: 395483
Aligned: 8 rows
Threshold Bit Score: 233.593
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6SSJ_A   30 IKMLKDMKEGV--KQYGPNSPYMRTLLdsiahGHRLIPYDWEILAKSSLSPSQFLQFKTWWIDGVQEQVRRNRAANPPvN 107 
P11284  290 LKTLKELQSAV--RTMGPSAPYTLQVVdm-vaSQWLTPSDWHQTARATLSPGDYVLWRTEYEEKSKETVQKTAGKRKG-K 365  Mouse mammary tumor...
P31623  272 FKQLKELKIAC--SQYGPTAPFTIAMIes-lgTQALPPNDWKQTARACLSGGDYLLWKSEFFEQCARIADVNR--QQGiQ 346  Jaagsiekte sheep re...
P87889  312 IKMLKDMKEGV--KQYGPNSPYMRTLLdsiayGHRLIPYDWEILAKSSLSPSQFLQFKTWWIDGVQEQVRRNRAANPPvN 389  human
P14076  147 MKDLQAIKQEV--SQAAPGSPQFMQTI-------RLAVQQFDPTAKDLQDLLQYL---------CSSLVASLHHQQLDsL 208  Human T-cell lympho...
P18095  151 PRTLNAWVKLVeeKKFGAEVVPGFQAL-----SEGCTPYDINQMLNCVGDHQAAMQIIREIINEEAADWDSQHPI-PG-P 223  Human immunodeficie...
P04591  149 PRTLNAWVKVVeeKAFSPEVIPMFSAL-----SEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAG-P 222  HIV-1 M:B_HXB2R
1QRJ_A   17 MKDLQAIKQEV--SQAAPGSPQFMQTI-------RLAVQQFDPTAKDLQDLLQYL---------CSSLVASLHHQQLDsL 78  
6SSJ_A  108 IDADQLLG------IGQNWSTISQQAlMQNEAiEQVRAICLRAWEKIQ----DPGSACPSFNTVRQGSKEPYPDFVARLQ 177 
P11284  366 VSLDMLLG------TGQFLSPSSQIK-LSKDVlKDVTTNAVLAWRAIP----PPGVKKTVLAGLKQGNEESYETFISRLE 434  Mouse mammary tumor...
P31623  347 TSYEMLIG------EGPYQATDTQLNfLPGAY-AQISNAARQAWKKLP----SSSTKTEDLSKVRQGPDEPYQDFVARLL 415  Jaagsiekte sheep re...
P87889  390 IDADQLLG------IGQNWSTISQQAlMQNEAiEQVRAICLRAWEKIQ----DPGSTCPSFNTVRQGSKEPYPDFVARLQ 459  human
P14076  209 ISEAETRG------ITGYNPLAGPLRvQANNPqQQGLRREYQQLWLAAfaalPGSAKDPSWASILQGLEEPYHAFVERLN 282  Human T-cell lympho...
P18095  224 LPAGQLRDprgsdiAGTTSTVDEQIQwMYRPQnPVPVGNIYRRWIQIGlqkcVRKYNPTNILDIKQGPKEPFQSYVDRFY 303  Human immunodeficie...
P04591  223 IAPGQMREprgsdiAGTTSTLQEQIGwMTNNP-PIPVGEIYKRWIILGlnkiVRMYSPTSILDIRQGPKEPFRDYVDRFY 301  HIV-1 M:B_HXB2R
1QRJ_A   79 ISEAETRG------ITGYNPLAGPLRvQANNPqQQGLRREYQQLWLAAfaalPGSAKDPSWASILQGLEEPYHAFVERLN 152 
6SSJ_A  178 DVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKvpagsDVISEYVKA 230 
P11284  435 EAVYRVMPRGEGSDILIKQLAWENANSLCQDLIRPMRKT-----GTMQDYIRA 482  Mouse mammary tumor virus (STRAIN C3H)
P31623  416 DTIGKIMSDEKAGMVLAKQLAFENANSACQAALRPYRKK-----GDLSDFIRI 463  Jaagsiekte sheep retrovirus
P87889  460 DVAQKSIADEKAGKVIVELMAYENANPECQSAIKPLKGKvpagsDVISEYVKA 512  human
P14076  283 IALDNGLPEGTPKDPILRSLAYSNANKECQKLLQARGHTn----SPLGDMLRA 331  Human T-cell lymphotrophic virus type 1 (Carib...
P18095  304 KSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMN-----PTLEEMLTA 351  Human immunodeficiency virus type 2 (ISOLATE BEN)
P04591  302 KTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPA-----ATLEEMMTA 349  HIV-1 M:B_HXB2R
1QRJ_A  153 IALDNGLPEGTPKDPILRSLAYSNANKECQKLLQARGHTn----SPLGDMLRA 201 
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