6S3A,5GQ1,5Z3Q,7LAR


Conserved Protein Domain Family
RNA_helicase

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pfam00910: RNA_helicase 
RNA helicase
This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Statistics
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PSSM-Id: 459992
Aligned: 103 rows
Threshold Bit Score: 58.3849
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6S3A_A  11 LLLHGSP-GAGKSVATNLigrslaeklnSSVYS-LPPDPDHFDGYK-QQAVVIMDDLCQNP-DGk-----DVSLFCQMVS 81 
Q9Z0D5 169 LWVYGPQgGEGKTSKAKEli------trGWFYTrGGKKDDVAYSYVeDPTRHVVFDIPRDM-QEycnyslIEMLKDRIII 241 Milk vetch dwarf viru...
O91250 168 IWVYGPHgGEGKSAFAKYltl-----keGWWYTaGGKATDMLYSYSlDPTCHVCIDIPRCTrEEyinysvIEQIKNRVII 242 Faba bean necrotic ye...
Q83030 171 IWVYGPNgGEGKSTFARYlsl-----kpGWGYInGGKTSDMMHIITmDPDNHWIIDIPRSH-SDylnygvIEQIKNRVLI 244 Banana bunchy top virus
Q9Z0D3 170 IWVYGPKgGEGKSTFARYlsl-----kqGWGYLpGGPTHDMLHIISgEPKNNWVFDIPRVA-SEyvnygvLEQVKNRVMV 243 Milk vetch dwarf viru...
Q87009 168 IWVYGSDgGEGKTSFAKEli------ryGWFYTaGGKTQDVLYMYAqDPERNIAFDVPRCS-SEmmnyqaMEMLKNRVFA 240 Subterranean clover s...
P0CK61 168 IWVYGPNgNEGKSQFGKFlgl-----kkDYLYLpGGKTQDMTYMLMkNPKANVVMDIPRCN-SEylnyqfMELIKNRTIY 241 Faba bean necrotic ye...
Q66005 177 LWICGRDgGDGKSVFAKYlgl-----kpDWFYTcGGTRKDVLYQYIeDPKRNLILDVPRCN-LEylnyalLECVKNRAFS 250 Coconut foliar decay ...
Q9IR51 176 IWVYGPQgGEGKTSYAKHlvk-----trDAFYStGGKTADIAFAWD--HQELVLFDFPRSF-EEyvnygvIEQLKNGIIQ 247 Milk vetch dwarf viru...
Q8QTK7 176 IWVYGPNgGEGKTTYAKHlmk-----tkNAFYSpGGKSLDICRLYN--YEEIVIFDIPRCK-EEylnyglLEEFKNGIIQ 247 Banana bunchy top virus
6S3A_A  82 SVDFVPPMAALEEKGilftsPFVLASTN 109
Q9Z0D5 242 SNKYEPITNCQVYN------IHVIVMAN 263 Milk vetch dwarf virus (isolate 1)
O91250 243 NTKYEPCTIRDDGHN-----VHVIVFCN 265 Faba bean necrotic yellows virus (isolate SV292-88)
Q83030 245 NTKYEPCVIRKDGQN-----VHVIVMAN 267 Banana bunchy top virus
Q9Z0D3 244 NTKYEPIVIRDDNHP-----VHVIVFAN 266 Milk vetch dwarf virus (isolate 1)
Q87009 241 STKYRPVDLCIRKL------VHLIVFAN 262 Subterranean clover stunt virus (strain F)
P0CK61 242 SYKYEPVGCIINNK------IHVIVLAN 263 Faba bean necrotic yellows virus (isolate SV292-88)
Q66005 251 SDKYEPLSYLGFDH------VHVLVFAN 272 Coconut foliar decay virus
Q9IR51 248 SGKYQSVIKYSDY-------VEVIVFAN 268 Milk vetch dwarf virus (isolate 1)
Q8QTK7 248 SGKYEPVLKIVEY-------VEVIVMAN 268 Banana bunchy top virus
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