4A8S,1KHW


Conserved Protein Domain Family
RdRP_1

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pfam00680: RdRP_1 (this model, PSSM-Id:395551 is obsolete and has been replaced by 425815)
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RNA dependent RNA polymerase
Statistics
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PSSM-Id: 395551
Aligned: 21 rows
Threshold Bit Score: 260.812
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4A8S_B   35 EGAIETYEGLLSVDPRFlsFKNELSRYLTDHfpANVDEYgrvygngvrtnffgmrhmngfpmipatwplaSNLKKRADAd 114  Pseudomonas virus phi6
P0C6X4 4801 VAAITSGIKFQTVKPGN--FNQDFYEFVKSKglFKEGST-------------------------------VDLKHFFFTq 4847 Human coronavirus H...
P03600 1197 TPSEWHLDTPCDKVPSI--LVPTDPRIPAQH--EGYDPA-------------------------------KSGVSKYSQp 1241 Cowpea mosaic virus...
Q83883 1309 WRSSPEPLPPGVYEPAY--LGGKDPRVQNGP--SLQQVL-------------------------------RDQLKPFADp 1353 Norovirus Hu/1968/US
1KHW_B   37 VPGVPDEYKT-GYRPAN--LGRSDPDSDKSL----MNIA-------------------------------VKNLQVYQQe 78   Rabbit hemorrhagic ...
Q9DUN3 1386 SPAHVDDYEECTHQPAS--LGAGDPRCPISL----TGIM-------------------------------VNNLQPYTE- 1427 Vesicular exanthema...
Q66914 1272 SPAHTEDFEECSHQPAS--LGSGDPRCPKSL----TAIV-------------------------------VDSLKPYCD- 1313 Feline calicivirus ...
Q9YJW3 1647 VGENDDVYDFMREHPTFtwLKDFMNEYAPSV--LSYSAY-------------------------------YKDLCKYNR- 1692 Barley yellow mosai...
P18247 2312 HFTEFLTVDAEAEAEAF--FRPLMDAYGKSL--LNRDAY-------------------------------IKDIMKYSKp 2356 Potato virus Y stra...
Q9JH69 1126 LQPIRHHVAVPMNVEVL--GYIPVDRLVERRn-VITDPL-------------------------------LKLVEPWRQ- 1170 Turkey astrovirus 1
4A8S_B  115 LADGPVSERDNLLFRAAVRLMFSDLEPVPLKir----kGSSTCIPYFSNDMGTKIEIAERa---lEKAEEAGNlmLQGK- 186  Pseudomonas virus phi6
P0C6X4 4848 DGNAAITDYNYYKYNLPTMVDIKQLLFVLEVv------YKYFEIYDGGCIPASQVIVNNY-----DKSAGYPFnkFG--- 4913 Human coronavirus H...
P03600 1242 MSALDPELLGEVANDVLELWHDCAVDWDDFG-------EVSLEEALNGCEGVEYMERIPL-----ATSEGFPHilSRNGk 1309 Cowpea mosaic virus...
Q83883 1354 RGRMPEPGLLEAAVETVTSMLEQTMDTPSPW------------------SYADACQSLDK-----TTSSGYPH------- 1403 Norovirus Hu/1968/US
1KHW_B   79 PKLDKVDEF----IERAAADVLGYLRFLTKG------------ERQANLNFKAAFNTLDL-----STSCG-PFv------ 130  Rabbit hemorrhagic ...
Q9DUN3 1428 ASPGPDTAT----LNRVSKMLTSHMEGYVPK------------VHKTEEDSISAFYMLNH-----DTLCG-PY--IGAR- 1482 Vesicular exanthema...
Q66914 1314 KVEGPPHDI----LHRVQKMLIDHLSGFVPV------------NISSETSMLSAFHKLNH-----DTSCG-PY--LGGR- 1368 Feline calicivirus ...
Q9YJW3 1693 AKHVLTYNPEELHYATKGLIKMLEDAGLTQG---------------SVRTPQQVISDIQW-----NTSAGPSYqgK---- 1748 Barley yellow mosai...
P18247 2357 IDVGVVDRM-HLRKPSIGLSSTCNVHGFKKC--------------AYVTDEQEIFKALNM-----KAAVGASY---GCK- 2412 Potato virus Y stra...
Q9JH69 1171 ETYGPAVWTIKAYNKMFEKFFYSEPLEFAQLdssilnlADSYCLQEHDYMSGSQIVPITSteknlDSTPGYP-------- 1242 Turkey astrovirus 1
4A8S_B  187 ---FDDAYQLHQmgGAYYVVYRAQSTDAItldpktGKFVSKDRMVADFEYAVTgGEQGSLfAASKDASRLKEQYGIDVPD 263  Pseudomonas virus phi6
P0C6X4 4914 ---KARLYYEALsfEEQNEIYAYTKRNv------lPTLTQMNLKYAIS-------------AKNRARTVAGVSILSTMTG 4971 Human coronavirus H...
P03600 1310 ekgKRRFV-QGDdcVVSLIPGTTVAKAYEeleasaHRFVP-ALVGIECPKDEK-LPMRKVfDKPKTRCFTILPMEYNLVV 1386 Cowpea mosaic virus...
Q83883 1404 ---HKRKNDDWNgtTFVGELGEQAAHANNm----yENAKHMKPIYTAALKDEL-VKPEKIyQKVKKRLLWGADLGTVVRA 1475 Norovirus Hu/1968/US
1KHW_B  131 ---PGKKIDHVKdgVMDQVLAKHLYKCWSv----aNSGKALHHIYACGLKDEL-RPLDKV-KEGKKRLLWGCDVGVAVCA 201  Rabbit hemorrhagic ...
Q9DUN3 1483 ---KKD---HVKdgVLDKNLLDLLSSKWNr----aKLGLALPHEYALGLKDEL-RPKDKV-AVGKRRLIWGCDVGVSTVC 1550 Vesicular exanthema...
Q66914 1369 ---KKD---HMTngEPDKPLLDLLSAKWKl----aTQGIALPHEYTIGLKDEL-RPVEKV-AEGKRRMIWGCDVGVATVC 1436 Feline calicivirus ...
Q9YJW3 1749 ---KRDLCAHLSd-DEVLHLAEVCRQQFL--------EGKSTGVWNGSLKAEL-RTIEKV-EPEKTRVFTASPITSLFAM 1814 Barley yellow mosai...
P18247 2413 ---KKDYFEHFTdaDKEEIVMQSCl----------RLYKGLLGIWNGSLKAEL-RCKEKI-LANKTRTFTAAPLDTLLGG 2477 Potato virus Y stra...
Q9JH69 1243 ---------KFKvfSTEREYLSTCG--WDeyktvwQVGPREKPLWWCFLKTEV-LKLAKI-EQDDIRMILCTDPVFTRIG 1309 Turkey astrovirus 1
4A8S_B  264 GFFCERrrtaMGGPFALNAPIMAvAQPVRNKIYSKYAYTFHHttrlnkEEKVKEWslcvatDVSDHDTFWPGWLRDl--- 340  Pseudomonas virus phi6
P0C6X4 4972 RMFHQK----CLKSIAATRGVPV--VIGTTKFYGGWDDMLRHlikdvdNPVLMGW------DYPKCDRAMPNILRI---- 5035 Human coronavirus H...
P03600 1387 RRKFLN----FVRFIMANRHRLS-CQVGINPYSMEWSRLAARmk--ekGNDVLCC------DYSSFDGLLSKQVMD---- 1449 Cowpea mosaic virus...
Q83883 1476 ARAFGP----FCDAIKSHVIKLP-IKVGMNT-IEDGPLIYAEha---kyKNHFDA------DYTAWDSTQNRQIMT---- 1536 Norovirus Hu/1968/US
1KHW_B  202 AAVFHN----ICYKLKMVARFGP-IAVGVDMTSRDVDVIINNlt--skASDFLCL------DYSKWDSTMSPCVVR---- 264  Rabbit hemorrhagic ...
Q9DUN3 1551 AAAFKR----VSESIMANHALGF-IQVGINMDGPAVEDLFKRle--rpKHDRYCV------DYSKWDSTQPPKVTS---- 1613 Vesicular exanthema...
Q66914 1437 AAAFKG----VSDAITANHQYGP-VQVGINMDSPSVEALHQRik---sAAKVYAV------DYSKWDSTQSPRVSA---- 1498 Feline calicivirus ...
Q9YJW3 1815 KFYVDD----FNKKFYATNLKAP-HTVGINKFGRGWERLHDKln--rpGWLHGSG------DGSRFDSSIDPFFFD---- 1877 Barley yellow mosai...
P18247 2478 KVCVDD----FNNQFYSKNIECC-WTVGMTKFYGGWDKLLRRl----pENWVYCDa-----DGSQFDSSLTPYLIN---- 2539 Potato virus Y stra...
Q9JH69 1310 AAFEQH----QNSLMKLETENHH-AQVGWSPFFGGIHRRATRly--geHRYYVEL------DWTRFDGTIPPELFRrikl 1376 Turkey astrovirus 1
4A8S_B  341 ICDELLN--MGYaPWWVKL--FETSLKLPvyVGAPAPEQGHTLLGDPSnpdlevGLSSGQGATDLMGTLL---------- 406  Pseudomonas virus phi6
P0C6X4 5036 VSSLVLArkHEFcCSHGDR--FYRLANECaqVLSEIVMCGGCYYVKPG------GTSSGDATTAFANSVFnicqavtanv 5107 Human coronavirus H...
P03600 1450 VIASMINelCGG-EDQLKN--ARRNLLMA--CCSRLAICKNTVWRVEC------GIPSGFPMTVIVNSIFn--------- 1509 Cowpea mosaic virus...
Q83883 1537 ESFSIMSrlTAS-PELAEV-----VAQDL--LAPSEMDVGDYVIRVKE------GLPSGFPCTSQVNSINh--------- 1593 Norovirus Hu/1968/US
1KHW_B  265 LAIDILAdcCEQ-TELTKS-----VVLTL--KSHPMTILDAMIVQTKR------GLPSGMPFTSVINSICh--------- 321  Rabbit hemorrhagic ...
Q9DUN3 1614 QSIDILRhfTDK-SPIVDS-----ACATL--KSNPIGIFNGVAFKVAG------GLPSGMPLTSIINSLNh--------- 1670 Vesicular exanthema...
Q66914 1499 ASIDILRyfSDR-SPIVDS-----AANTL--KSPPIAIFNGVAVKVSS------GLPSGMPLTSVINSLNh--------- 1555 Feline calicivirus ...
Q9YJW3 1878 VVKTIRKhfLP--SEHHKA--IDLIYDEI--LNTTICLANGMVIKKNV------GTQRQ-PSTVVDNTLV---------- 1934 Barley yellow mosai...
P18247 2540 AVLTIRStyME--DWDVGLqmLRNLYTEI--VYTPISTPDGTIVKKFR------GNNSGQPSTVVDNSLMv--------- 2600 Potato virus Y stra...
Q9JH69 1377 MRFFLLDpkYKT-PENRDR--YNWYVENL--IDKVVLLPTGEVCKIYG------GNPSGQFSTTVDNNFVn--------- 1436 Turkey astrovirus 1
4A8S_B  407 -------------MSITYlvmqldhtaphLNSRIKDMPSAcrfldsywqgheeirqIS-KSDDAMLGWTKGRAlv----g 468  Pseudomonas virus phi6
P0C6X4 5108 cslmacnghkiedLSIRNlqk------rlYSNVYRTDYVDytfvneyyeflckhfsMMiLSDDGVVCYNSDYAnkgyian 5181 Human coronavirus H...
P03600 1510 ------------eILIRYhyk------klMREQQAPELMVqsfdk-------liglVT-YGDDNLISVNAVVTpy---fd 1560 Cowpea mosaic virus...
Q83883 1594 ------------wIITLCa----------LSEATGLSPDVvqs----------msyFSfYGDDEIVSTDIDFDp------ 1635 Norovirus Hu/1968/US
1KHW_B  322 ------------wLLWSAa---------vYKSCAEIGLHCsnlye-------dapfYT-YGDDGVYAMTPMMVs-----l 367  Rabbit hemorrhagic ...
Q9DUN3 1671 ------------cLMVGSa---------vVKALEDSGVRVtwnif------dsmdlFT-YGDDGVYIVPPLISs-----v 1717 Vesicular exanthema...
Q66914 1556 ------------cLYVGCa---------iLQSLEARGVPVtwnlf------stfdmMT-YGDDGVYMFPMMFAs-----v 1602 Feline calicivirus ...
Q9YJW3 1935 -------------LMTAFl----------YAYIHKTGDRElalln------erfifVC-NGDDNKFAISPQFDee----f 1980 Barley yellow mosai...
P18247 2601 ------------vLAMHYa---------lIKECVEFEeids-----------tcvfFV-NGDDLLIAVNPEKEs-----i 2642 Potato virus Y stra...
Q9JH69 1437 ------------vWLTVFela------ylFYKEHNRLPTIceikk-------htdwIC-YGDDRLLAVDKRFIns---yd 1487 Turkey astrovirus 1
4A8S_B  469 GHRLFEMLKEG-KVNPSPyMKISyehggaflgdillydSRREPGSAIFvgninsmLNNQFSPEygvqsgvRDRSKRKRPF 547  Pseudomonas virus phi6
P0C6X4 5182 ISAFQQVLYYQnNVFMSE-SKCWven----------diTNGPHEFCSQ-------HTMLVKIDgdy--vyLPYPDPSRIL 5241 Human coronavirus H...
P03600 1561 GKKLKQSLAQG-GVTITD-GKDKtsl----------elPFRRLEECDF-------LKRTFVQRsst--iwDAPEDKASLW 1619 Cowpea mosaic virus...
Q83883 1636 -aRLTQILKEY-GLKPTR-PDKTegp----------iqVRKNVDGLVF-------LRRTISRDaa---gfQGRLDRASIE 1692 Norovirus Hu/1968/US
1KHW_B  368 LPAIIENLRDY-GLSPTA-ADKTef------------iDVCPLNKISF-------LKRTFELTdi---gwVSKLDKSSIL 423  Rabbit hemorrhagic ...
Q9DUN3 1718 MPKVFANLRQF-GLKPTR-TDKSdae----------itPIPADEPVEF-------LKRTIVRTen---gvRALLDRSSII 1775 Vesicular exanthema...
Q66914 1603 SDQIFANLSAY-GLKPTR-VDKSvgs----------iePIDP-ESVVF-------LKRTITRTpq---giRGLLDRSSII 1659 Feline calicivirus ...
Q9YJW3 1981 GHDFSPELVEL-GLTYEF-DDIT-----------------SDICENPY-------MSLTMVKTpf---gvGFSLPVERII 2031 Barley yellow mosai...
P18247 2643 LDRMSQHFSDL-GLNYDF-SSRT-----------------RRKEELWF-------MSHRGLLIeg---myVPKLEEERIV 2693 Potato virus Y stra...
Q9JH69 1488 TAAVIAMYKDVfGMWVKP-DNIK---------------VFPSLEGVSF-------CGMVWTKRkg---qyVGKPNVDKIL 1541 Turkey astrovirus 1
4A8S_B  548 PGLAWASMkdty--------gacPIYSDVLEAIeRcwWNAFGESYRAYREdmlkrdtlELSRYVASMA 607  Pseudomonas virus phi6
P0C6X4 5242 GAGCFVDDllktd------svllIERFVSLAID-A--YPLVYHENEEYQK--------VFRVYLEYIK 5292 Human coronavirus HKU1 (isolate...
P03600 1620 SQLHYVNCnncek------evayLTNVVNVLRE-L--YMHSPREATEFRR--------KVLKKVSWIT 1670 Cowpea mosaic virus strain SB
Q83883 1693 RQIFWTRGpnhsdps--etlvphTQRKIQLISL-L--GEASLHGEKFYRK---------ISSKVIHEI 1746 Norovirus Hu/1968/US
1KHW_B  424 RQLEWSKTtsrhmvieetydlakEERGVQLEEL-Q--VAAAAHGQEFF-N--------FVCRELERQQ 479  Rabbit hemorrhagic disease virus
Q9DUN3 1776 RQFYYIKAentenwtvppkridtPSRGQQLYNA-C--LYASQHGEEFYTS--------KIVPLIERAV 1832 Vesicular exanthema of swine vi...
Q66914 1660 RQFYYIKGensddwktppksidpTSRGQQLWNA-C--LYASQHGVEFY-N--------KIYKLAQKAV 1715 Feline calicivirus (strain Urbana)
Q9YJW3 2032 AIMQWSKKg--------------GVLHSYLAGIsA--IYESFNTPKLFKS--------I-YAYLLWLT 2074 Barley yellow mosaic virus isol...
P18247 2694 SILQWDRA---------------DLPEHRLEAIcA--AMIESWGYSELTH--------QIRRFYSWLL 2736 Potato virus Y strain N
Q9JH69 1542 STLSDPVS---------------RLPDIQSLWG-K--LVSLRLLCENESD--------EVVDYLDKQI 1583 Turkey astrovirus 1
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