Conserved Protein Domain Family
capsid_maj_N4

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TIGR04387: capsid_maj_N4 
major capsid protein, N4-gp56 family
Members of this family are phage major capsid proteins as found in phage N4 (a double-stranded DNA virus) plus many additional lytic phage and integrated prophage regions. [Mobile and extrachromosomal element functions, Prophage functions]
Statistics
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PSSM-Id: 275180
Aligned: 24 rows
Threshold Bit Score: 154.82
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ADU79207      17 TPSTIGPQMNTYQWDRKSLIDAEKD-IVFS--------RLANVR-NMPKHFG-KTIKAYHY----MPLLSDLNVNDQGID 81  Enterobacter ph...
ZP_03723885    3 IDTTTVANTIRPYFNKKLLEGAKQL-VTML--------DYAQLE-DLPDKEGaTSVRFFKApepdLKAQGAPAALTEGIP 72  Diplosphaera co...
EKD22503      11 TPSSVGPQISNEFYQKKALIEAAKE-QYFG--------QLADVT-AMPKNMG-KKIKRYHY----LPLLDDANINDQGID 75  uncultured bact...
AEJ81604      18 IDAPDGKQMNTFFWWKKALIEARKD-QYFM--------PLADVV-SMPKNYG-KEIRVYHY----IPLLDDRNVNDQGID 82  Erwinia phage v...
EGE20580      11 PTSVGATQLNPHVFERKALLDSLEE-AYFS--------QLADSR-TMPKTSG-TMIKQYRY----FPVIDDRNSNEMGLD 75  Moraxella catar...
ZP_05981566    3 DLNTKLSDLIDPEVMGDMVSARIPKkLRVA--------PFAKIDdTLAGVPG-DTITVPAY----TYIGDADD-VAEGGE 68  Subdoligranulum...
ZP_06599515    2 AGMTKLSGLVNPQVMADMVSATLPKkIKFS--------PFAKVDtTLSGQPG-DTITVPKY----AYIGDAED-VAEGVA 67  Oribacterium sp...
ZP_04599620    2 ANETKLANIINPQVMQDMVSAGLPKaLKFT--------QFAAVNeELKGVPG-DTVTIPAW----AYIGAAED-VAEGAE 67  Veillonella dis...
YP_005098414   4 TVIPFGDPKAQKKWSGQLFVETTKK-SYFDrfegtsenSVIQRKtDLESDAG-DRISFDLS----VQLRGKPTAGDDRLK 77  Erwinia phage P...
YP_002922722   4 TVIPFGDSKAVKRWSADLAVDVRKKsYFEQrfigtsenAVIQRKtELESDSG-DTIKFDLS----VHLRGKPTYGDNRVE 78  Burkholderia ph...
ADU79207      82 AKG-AQYANGNIYgssrdvgtissklptlsetggrvnrvgftrkvieGSMHKMGFFYEFSRESMDFDSDAELHQhmRREA 160 Enterobacter ph...
ZP_03723885   73 PTVyRDVTYTTLD----------------------------------VNLVQRGQVAKATDIATTTALFNHLKQ--VIEL 116 Diplosphaera co...
EKD22503      76 AAG-VAIANGNLYgsskdigtisgklpvlsetggrvnrvgfkrkeieGTLEKFGFFDEYTQESLDFDTDAELMQhiNREM 154 uncultured bact...
AEJ81604      83 AAG-ATIVNGNLYgsskdigtivgkiptltetggrvnrvgfsrisrvGRIQKFGFFTEFSQESLDFDSDSELFShiSTEL 161 Erwinia phage v...
EGE20580      76 AKG-AKYANGNLYgssndagliadkfpvlgelggrknrigmtrkeiqSNLQKFGVFYEYSNDAVNFDSDAKLLEhlERET 154 Moraxella catar...
ZP_05981566   69 VAI-EKMTTSTRK----------------------------------ATIKKAMKGIGLTDEAVLSGYGNPVGE--ANTQ 111 Subdoligranulum...
ZP_06599515   68 IGT-VVLTASTTT----------------------------------AQVKKAAKAVEITDEAALSGYGDPIGE--AANQ 110 Oribacterium sp...
ZP_04599620   68 VTT-ATMSASTKT----------------------------------VQIKTAGKAITLTDKAVNSGLGDPVGQ--ATYQ 110 Veillonella dis...
YP_005098414  78 GKE-EALKFFTDE----------------------------------VIIDQLRKSVSAGGKMTRKRTAHDLRKv-AKDR 121 Erwinia phage P...
YP_002922722  79 GKE-ENLRFYQDE----------------------------------VKIDQVRHSVSAGGRMSRKRTVHNIRRi-ARDR 122 Burkholderia ph...
ADU79207     161 IQGAAQMYEAQLQIDLL----NGAGVVM-----------------YA---------GAATKDSEVTGEGatpslVSFDDL 210 Enterobacter ph...
ZP_03723885  117 MQGEFALDVDTILRNQCihptAG-LMKR-----------------YAqga---tsfAALAAATRANGR------IVPRDV 169 Diplosphaera co...
EKD22503     155 VMGANEITEDSLQIDLI----NAAGVVK-----------------YA---------GNATDTVNVGADDl----VSYSDL 200 uncultured bact...
AEJ81604     162 MNGAVQLTEAVLQKDLL----AGAGTIV-----------------YT---------GAATQDSEITGEGatpsvVDYDDL 211 Erwinia phage v...
EGE20580     155 TNACMTVYEDKLQLDLL----TNAGLVK-----------------YA---------GTATQNSELSHGMe----LKYADL 200 Moraxella catar...
ZP_05981566  112 LALAIAAKIDNDCMDAL----LTASLSY-----------------------------DGSANT-----------ISYNGI 147 Subdoligranulum...
ZP_06599515  111 LTMAIAAKVDNDCYEAL----KGATLQY-----------------------------DGSAKI-----------ISYEGI 146 Oribacterium sp...
ZP_04599620  111 LSLSMADKIDNDVLAAL-----------------------------------------GTTTLAATSTKv----ISYEGV 145 Veillonella dis...
YP_005098414 122 LSDYWAQYIDELKFVYMsglrGTNEDFIedfdyag----hagnplRQpdaqhllfgGAANSKASLTADDk----MSRVTI 193 Erwinia phage P...
YP_002922722 123 LGDYFYKFTDELLFIYL----SGARGINldfietpdfqgyagnplEApdadhllygGAATSKASLTANDi----MDPLVI 194 Burkholderia ph...
ADU79207     211 MKLYLVLKDNRTPQQtqyiygsrmidtrtiSKGYVMYASSDMLPHFMSMqnytkkDAWIPVEQY-----GDAGTIMEHEV 285 Enterobacter ph...
ZP_03723885  170 LDAATRLKINRAPKFg--------------NKAYACQLPPQLTRDILED------PDWKSLIKS-----QYADKFFKGEV 224 Diplosphaera co...
EKD22503     201 MHLAIDLDNNRTPKHttaitgtrmvdtktiPACRVAYIGSELLPTFKAMkdlhnlPAFIPVEKY-----AAGGTTLTGEV 275 uncultured bact...
AEJ81604     212 MRLSITLDENRTPKQtkvitgsrmidtrtiSAGRVLYIGSELIPLIRKLvdpfgnAAFVPVHQY-----ADAGTILNGEI 286 Erwinia phage v...
EGE20580     201 VKLGIDLDKNRCPKQtkiitgtrltdtrtiPDCRIAYVGSELIPTLEAMvdyhnkPAFIPAHQY-----AAGTTLLKGEV 275 Moraxella catar...
ZP_05981566  148 VDAVDLFEEEMG------------------SSDKVMFIHPKQVTQLRKN------ADFISADKYq------aGVALTGEI 197 Subdoligranulum...
ZP_06599515  147 VDAVDKFGDETDA-----------------GVNKIIFVHPNQVTQLRKD------PNFLDINKYpi----anGVIMSGTI 199 Oribacterium sp...
ZP_04599620  146 VAAVDKLNEEG-------------------NTDKVLFVAPSQVTTLRLD------PNFIDRNKYn------aDVMMNGEI 194 Veillonella dis...
YP_005098414 194 ERATTKARMMRARDPktanll---pvsvggEKHYVVLMSPYQEYDLRNEvg---eRGWLEVQKAaaaaeGKNNPIFKGGL 267 Erwinia phage P...
YP_002922722 195 EKAVEKAAMMQAENPetanmv---pvsidgDDHYVTVMSEYQATDMRTAa----gGRWIDFQKAaaaaeGAKNPIFKGGL 267 Burkholderia ph...
ADU79207     286 GTVGMFRIVTPPEMLKWEGAGA--AvtgaattpmhstNSK-YDIYPLLVVG----AESFSTIgffysgEKSKFSIISKLP 358 Enterobacter ph...
ZP_03723885  225 GEISGVRLVEQTNPFVELDTEGteSanpv----ddgtG-N-GLIYSAIVCG----KQAYGAVnm---nSMGASPHKPQIV 291 Diplosphaera co...
EKD22503     276 GSVDNFRLVVVPEMLKWAGAGAdasad-----stnyeTANrFDVFPILVVG----NESFTTIgfqtdgKTVKFKITHKAP 346 uncultured bact...
AEJ81604     287 GTVDQFRLVVVPEMLHWAGAGAtvGtnpg----yretNGK-YDIYPMLCVG----AESFTTIgfqtdgKTLKFKVTTKMP 357 Erwinia phage v...
EGE20580     276 GRIAGFRIIVVPRMMKWAGVGAaatda------ayykTNNkYDVFPFLVVG----DEAFTTIgfqsggGNGKFTTIHKKA 345 Moraxella catar...
ZP_05981566  198 GMIAGCRLVPSKKVPLSGG----------------------VYTCPIVKLE----SDPEVD-------DEIPALTIYRKR 244 Subdoligranulum...
ZP_06599515  200 GSIAGCRVVKSKKVALDSGNA--------------------YYLNPIMVDDsadpNEDPAADkt---aTVSSALTIYLKR 256 Oribacterium sp...
ZP_04599620  195 GMIAGCRVVASRRIDDSKAT---------------------IDNFIVCLTP----EVEDGT-------PALPAVTIYTKA 242 Veillonella dis...
YP_005098414 268 GMINNAVLHSHESVIRMNDYGA---------------GQN-VQAARALFLG----RQAAVI-------AYGTAGGLRFTW 320 Erwinia phage P...
YP_002922722 268 GMINNVVLHKHRNCIRFNDYGAgaN----------------VEAARALFMG----RQAGVI-------AYGTANGLRFDW 320 Burkholderia ph...
ADU79207     359 GMETADRTDPYGEMGFCSIKWWYGFLPERTERLAVIKTVA 398 Enterobacter phage EcP1
ZP_03723885  292 IVDKPDSGNPLAQFILVGWKAFWASTVLQKRWGITLRTKS 331 Diplosphaera colitermitum TAV2
EKD22503     347 GEATADRNDPYGETGFMSIKWYYGFMALRPERIALIKTVA 386 uncultured bacterium
AEJ81604     358 GEATADRNDPYGEMGFSSIKWYYGTLILRPERLALVKTVA 397 Erwinia phage vB_EamP-S6
EGE20580     346 GEATASSADPYGETGFTSKKWWYGFMPQYVERIALLKVVA 385 Moraxella catarrhalis BC8
ZP_05981566  245 DVNIETERKPKTRTTEITADEFYVAVLSNEAKVVLAKFKE 284 Subdoligranulum variabile DSM 15176
ZP_06599515  257 DVNTETDRDILKKTTVLSADEHYTAVLSNESKVVLAKFKK 296 Oribacterium sp. oral taxon 078 str. F0262
ZP_04599620  243 EANLETERHAKALSTDIVVSAHYAVGLTNESKVVKATFKK 282 Veillonella dispar ATCC 17748
YP_005098414 321 KEETDDFGNEPTVAAGTILGISKTRFNKRDFGILTIDTAA 360 Erwinia phage PEp14
YP_002922722 321 KETTKDYENEPAIAAGFIAGMKKARFNKKDFGVISIDTAA 360 Burkholderia phage BcepIL02
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