5GQ1,5Z3Q


Conserved Protein Domain Family
RNA_helicase

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pfam00910: RNA_helicase (this model, PSSM-Id:395730 is obsolete and has been replaced by 459992)
RNA helicase
This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Statistics
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PSSM-Id: 395730
Aligned: 101 rows
Threshold Bit Score: 59.1405
Created: 22-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5GQ1_A  10 LIIRGSP-GTGKSLATGIiaraiadkyHSSVYS-LPPDPDHFDGYK-QQVVTVMDDLCQNP-DGk-----DMSLFCQMVS 80 
Q9Z0D5 169 LWVYGPQgGEGKTSKAKEli------tRGWFYTrGGKKDDVAYSYVeDPTRHVVFDIPRDM-QEycnyslIEMLKDRIII 241 Milk vetch dwarf viru...
O91250 168 IWVYGPHgGEGKSAFAKYlt-----lkEGWWYTaGGKATDMLYSYSlDPTCHVCIDIPRCTrEEyinysvIEQIKNRVII 242 Faba bean necrotic ye...
Q83030 171 IWVYGPNgGEGKSTFARYls-----lkPGWGYInGGKTSDMMHIITmDPDNHWIIDIPRSH-SDylnygvIEQIKNRVLI 244 Banana bunchy top virus
Q9Z0D3 170 IWVYGPKgGEGKSTFARYls-----lkQGWGYLpGGPTHDMLHIISgEPKNNWVFDIPRVA-SEyvnygvLEQVKNRVMV 243 Milk vetch dwarf viru...
Q87009 168 IWVYGSDgGEGKTSFAKEli------rYGWFYTaGGKTQDVLYMYAqDPERNIAFDVPRCS-SEmmnyqaMEMLKNRVFA 240 Subterranean clover s...
P0CK61 168 IWVYGPNgNEGKSQFGKFlg-----lkKDYLYLpGGKTQDMTYMLMkNPKANVVMDIPRCN-SEylnyqfMELIKNRTIY 241 Faba bean necrotic ye...
Q66005 177 LWICGRDgGDGKSVFAKYlg-----lkPDWFYTcGGTRKDVLYQYIeDPKRNLILDVPRCN-LEylnyalLECVKNRAFS 250 Coconut foliar decay ...
Q9IR51 176 IWVYGPQgGEGKTSYAKHlv-----ktRDAFYStGGKTADIAFAWD--HQELVLFDFPRSF-EEyvnygvIEQLKNGIIQ 247 Milk vetch dwarf viru...
Q8QTK7 176 IWVYGPNgGEGKTTYAKHlm-----ktKNAFYSpGGKSLDICRLYN--YEEIVIFDIPRCK-EEylnyglLEEFKNGIIQ 247 Banana bunchy top virus
5GQ1_A  81 TVDFIPPMASLAEAGvsftsKFVIASTN 108
Q9Z0D5 242 SNKYEPITNCQVYN------IHVIVMAN 263 Milk vetch dwarf virus (isolate 1)
O91250 243 NTKYEPCTIRDDGHN-----VHVIVFCN 265 Faba bean necrotic yellows virus (isolate SV292-88)
Q83030 245 NTKYEPCVIRKDGQN-----VHVIVMAN 267 Banana bunchy top virus
Q9Z0D3 244 NTKYEPIVIRDDNHP-----VHVIVFAN 266 Milk vetch dwarf virus (isolate 1)
Q87009 241 STKYRPVDLCIRKL------VHLIVFAN 262 Subterranean clover stunt virus (strain F)
P0CK61 242 SYKYEPVGCIINNK------IHVIVLAN 263 Faba bean necrotic yellows virus (isolate SV292-88)
Q66005 251 SDKYEPLSYLGFDH------VHVLVFAN 272 Coconut foliar decay virus
Q9IR51 248 SGKYQSVIKYSDY-------VEVIVFAN 268 Milk vetch dwarf virus (isolate 1)
Q8QTK7 248 SGKYEPVLKIVEY-------VEVIVMAN 268 Banana bunchy top virus
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