Conserved Protein Domain Family
C4_traR_proteo

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TIGR02419: C4_traR_proteo 
phage/conjugal plasmid C-4 type zinc finger protein, TraR family
Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA. [Mobile and extrachromosomal element functions, Prophage functions]
Statistics
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PSSM-Id: 274123
Aligned: 14 rows
Threshold Bit Score: 56.2497
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P44221    3 DVLDQLNEREEAllQNILAPHLDTElsddeVDAIAe-aGRQCSECGLPIPTTRLRANPFAHRCVSCQQDWE 72  Haemophilus influenzae Rd KW20
CAG74530  3 DEIDRDQEFNEQrlEEMIEQNRFKP-----AITPS---LFHCQFCGNPIPEKRRETLPGVSTCTECQSILE 65  Pectobacterium atrosepticum S...
P41065    3 DEADEAYSVTEQ--LTMTGINRIRQ-----KINAHgipVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66  Escherichia coli K-12
P41059    3 DAMDLAQLREQEdrERHISNARSRR-----HEVSA----FICEECDAPIPEARRRAIPGVQCCVTCQEILE 64  Enterobacteria phage 186
AAO56897  3 DIADFANDLVQEriDQALAARRAAKp---lLTIHS---FLFCETCEEAIPDARRMALPGCTQCLTCQSLLE 67  Pseudomonas syringae pv. toma...
BAA36267  2 DVIDQANERAENmvQAALAQRTNTR------LAPS---ALWCEDCGEQIPEARRQAAPGCECCISCQELRE 63  Pseudomonas phage phiCTX
AAQ59817  2 DEFDRAQELEALhlAASLAAQTAASr----PLGAS---LAQCDDCGEPIPEARRQASPGCTRCIDCQTLSE 65  Chromobacterium violaceum ATC...
AAS96780  2 DMFDQAQELERLdrEAALRKARATAdsegpEWIDG---VACCRECGEAIPEARLKALPGAGLCRACQEERE 69  Desulfovibrio vulgaris str. H...
AAN55702  3 DQFDRAQEVEQQfrDNALSRQRKHKveqpdINNKGe---RCCLDCGVVIEARRLVFMPTAVRCVECQTAKE 70  Shewanella oneidensis MR-1
AAQ58030  3 DFFDRASELETEfrEQALARHFEQWr----qNGLSh-----CEDCGDAIPDARRAAIPSCTRCVLCQQLAE 64  Chromobacterium violaceum ATC...
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