5XTC,6GCS,5LNK,5O31,6G2J,5LC5


Conserved Protein Domain Family
Complex1_LYR_NDUFB9_LYRM3

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cd20263: Complex1_LYR_NDUFB9_LYRM3 
LYR (leucine-tyrosine-arginine) motif found in NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (NDUFB9) and similar proteins
NDUFB9, also called LYR motif-containing protein 3 (LYRM3), or Complex I-B22 (CI-B22), or NADH-ubiquinone oxidoreductase B22 subunit (UQOR22), is an accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (complex I), and is believed to be not involved in catalysis. In general, accessory subunits are integral for assembly and function of Complex I, which functions in the transfer of electrons from NADH to the respiratory chain. NDUFB9 belongs to the Complex1_LYR-like superfamily that consists of proteins of diverse functions that are exclusively found in eukaryotes and contain the conserved tripeptide 'LYR' close to the N-terminus.
Statistics
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PSSM-Id: 380758
Aligned: 60 rows
Threshold Bit Score: 64.8916
Created: 4-Apr-2019
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 38 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Structure:5XTC; Homo sapiens NDUFB9 forms a Mitochondrial Respiratory Megacomplex I2III2IV2 with other NADH dehydrogenase [ubiquinone] subcomplex subunits, contacts at 4A.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  ## ### ##   ##    ### ### #  ##                  #  ### ######### ##### #
5XTC_p         5 HQQKVLRLYKRALRHLESWcv-qRDKYRYFACLMRARFEEHKnekDMAKATQLLKEAEEEFWYRQHPQPYIFPDSPGG 81  human
XP_015787933  21 HKQKVLSLYKQALHVIRFScd-dFFEAKEKALELRQRFEAAKdvkDYRVAKQMLEKGQEELRLAREIEDFNYTFSVGG 97  two-spotted spide...
PAA55041      20 HAQKVCRLYKAALYEVRAKhh-eRLDYRYHAVLLRQRFDENReveDPIKAKALLESAYSELQAKKSYFPFRWPNDPGG 96  Macrostomum lignano
KPM02779      15 HTRKVQNLFKRMVRNEESYls-eIHDIQFAWATVRAEFEKNRhvkDLRVARLLIEEGERRLAENLHPNPDRFIFSPGG 91  Sarcoptes scabiei
NP_498396     14 HRQKVTRLYKRCLREVDNWyggnNLEVRFQKCIIRARFDANAdevDTRKSQILLADGCRQLWEKRHFKPFRFALDPGG 91  Caenorhabditis el...
EFX77032      11 HTQKVCRLYKSALKHVFEYap-nRAAYRYAAVCVRQKFEENRhltDALKVQTLIEDTKEELFQKQHSHPFRYATSPGG 87  common water flea
NP_609642     11 HKRQVCSLYKRALRNLESWyd-rRNVYRYRAVQLRARFDENRs-kDLGEGIRLLACGQRELFETRHFQPRNFANSAGG 86  fruit fly
ELT92615      11 HAQKVCRLYRAGLRALRSEht-qRHLMRYDATLLRNRFDVNAvidDPIVATQVLEEGMEELRRKDHPLPFKFPNSPGG 87  Capitella teleta
XP_021354650  11 HAQLVKTLFKKVVRAHETTcg-sRLTLRSGAVHIRAMFDRHKderDMAKVEKMMEQAERYIHWVVPKRKQYDHCPGGI 87  Yesso scallop
OWR41179      10 HAQKVCSLYKQAMRQIESYyg-qRNVVRYHQVILRSRFDANKcvsDPKDQRRLYWVGEHELFLTKHPLPIAKCKHMIG 86  Danaus plexippus ...

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