6IQC,2JXN


Conserved Protein Domain Family
dsDNA_bind
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pfam01984: dsDNA_bind (this model, PSSM-Id:396530 is obsolete and has been replaced by 460404)
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Double-stranded DNA-binding domain
This domain is believed to bind double-stranded DNA of 20 bases length.
Links
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Statistics
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PSSM-Id: 396530
Aligned: 197 rows
Threshold Bit Score: 72.1289
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
6IQC_A             15 LLRRKAAQEQKRIEEEr------------KRKAE---LESQKESILRVILTPEARQRLTNIKLVKPEFAESLENQLIALA 79  Saccharolo...
EQB64634           10 IKRKRLADLQNQAAANqam--------qdREEIQrkaAEKERQDIVKRFVTPEAYERLTNVKLVRPELVENVENQIIMLA 81  Thermoplas...
WP_012309969       10 LQEKILAEMSEK-----------------KEREEearELQRIDAIVKSLLTSDAWQRLKRVELVKPELANDVKIYLIQLY 72  Candidatus...
WP_013194207        8 IRRKKREQIQQQQQAAqqpgi---dqyanQQEQAe-rMEEEKKKILRQILTPDARERLTRLKMSRNELGEQLESQLISLA 83  Methanohal...
HusnBIG:Mpsy_0496   8 IRRRRLEQIQQQQQAAqqqmapgdmqaamQQEQAraeMDAKKQALLRQILTPEARERLNTLKMSRKEMVEQLESQLITLA 87  Methanolob...
jgi:Mzhil_0532      8 IRKKRLQQLQQQQDSQysdtd---mqsayQQEQAkaeMEAQKQAILRQILTPEARERLTRLKMSRSEMAEHLESQLIMLA 84  Methanosal...
Q12ZJ1              7 IRQKRLAELQQQQSSPqnda-----qaayQQEQAqaeRDEQVKAVLRQVMTPEARERLTRLRLSRKELVEQLESQLVMLA 81  Methanococ...
WP_013037659        8 IRRKRLEEMQRQQASQqennp----qaayQQEQAqaeREAKIHAVLRQVTTPEARERLTRLKMSRKELAEQVESQIVGLA 83  Methanohal...
Q8TIN0             14 IRKRRLAEIQRQQAQQqpsdv----qaayQQEQAraeMEAQKQAILRQILTPEARERLTTLKMSRPALGEQLEMQLISLA 89  Methanosar...
jgi:Metho_0854      8 IRRKRLEQLQHQQAAQmhpdi----qaayQQEQMqaeMEAKKQSILRQILTPEARERMTTLKMSRPELVDQLESQLIMLA 83  Methanomet...

6IQC_A             80 QSGRIKIPITDEELKQILEQISQqNRRdFKIQIRER 115 Saccharolobus solfataricus P2
EQB64634           82 QSGRLNRLITDAEVKSLLARLS--EKReTKI--ERR 113 Thermoplasmatales archaeon I-plasma
WP_012309969       73 SAGKLTRKLTDDELKTLLASLSErAKRdFNIRVV-- 106 Candidatus Korarchaeum cryptofilum
WP_013194207       84 QSGRIQSVIDDEKLKQLLSQIQP-KKHdTNI--RRV 116 Methanohalobium evestigatum
HusnBIG:Mpsy_0496  88 QNGRIQSKIDDEKLKQLLVQLQP-PKRePTI--KRM 120 Methanolobus psychrophilus R15
jgi:Mzhil_0532     85 QSGRLQSKIDDAKLKQLLQKMMP-KKRdQKI--THL 117 Methanosalsum zhilinae DSM 4017
Q12ZJ1             82 QNGRLQTKIDDEKLKVLLTQMQP-QKRqTSI--TRM 114 Methanococcoides burtonii DSM 6242
WP_013037659       84 QNGRLQSTIDDEKMKALLTRMQP-KKHdPKI--TRL 116 Methanohalophilus mahii
Q8TIN0             90 QSGRLKAQIDDEQLKTLLMRMQP-KKRkTSI--TRV 122 Methanosarcina acetivorans C2A
jgi:Metho_0854     84 QNGRLQSQITDEKLKALLAQMQP-KKRkTSI--TRV 116 Methanomethylovorans hollandica DSM 15978
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